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Information for unigene UN33624

FASTA Sequence
Unigene ID: UN33624Length: 1423 SSR 
CCAACAGTGAAAAAGGAGTTTTAATGGTCGGATAAATAAACAAATTGTTGTCGTTGATGAATCAAGATGAGGAGACAAAGGAGAAT
GAAGAGACGGAGATGAGAAACATGATAAAGAAGTAGCTGAGAAGGAGACAGTGGCGGTTGAGATGCTTCCAGCTGGACCATTAGCA
GGATTGCCCGGCAAGGAACCACCACCTGGAGGAGTCACAAACGATCCTGGTGAAGCTGCTATGAATCCTGGACCATCATAATCCGG
TGAAGGCGCCGGTGCATACATTAGATCCTTAGGGACAGTATCAGGTGGAGCTAGAAGCGGCGCAAATCGTTGAGGCCCAGGACACC
GTGGTTGTAGAGAGTTAGACAGCATGGTCAAGATGGTGCCGTTAGCGAAACCATTGTAATCACAAGTCGTTACATTACAGCCAGCG
CTACTCTGCTGAACAGTGATGTTACCGAGCATGAGGTTGCTGTTTCTACACTGCATACTGGAGCAAGATACGGCTAAAGAAGCAGG
CTCACAATACAAACTGCGGCTCCCAAGCGCGCAGGTGCATTGCACACAGTGACCTGCGGCTAGAGCGTAGCTACCATTTGGAACTA
TCAATCCGAAATCCGAAGCATACTTGGGAAGTTTGAAGCACAAGCCGACAAAGGGACGGCGAGGATATCACCGGGAGCTAACATCA
GGAGCACCCATAGCATTCACATTCATCAAATCAGAAACAGTAGTCTCATACCTCCTCGCTATCCCGGACAACGTATCAACCCCTCT
CACCACATACGACAGATAAACAGCTGGCAGAGAGTTATCACTCCCGTTGAAGCAAGCGCAGGGCAGAGGGACAATAAGACTCGTCC
CGACATCGAGCAACGACGGATCAGCAACCGAGTTAGCCTCCTGGATCTGCTCGGCGGAGACCAGACCGCCGTAGACGGAGCCGGCG
ATGGAGGATAGCGTGTCGGAAGGGCGGGTCTTGTAGCACGTGGAGAGGGATTTTCGGATGCCGTCGAGGCAGGAGCAGGTGAGGGG
GATTTTGAGGAAGAGGTTGGAAGGGAGGATGTGGTCCTCGACGTCCGGGTAGGAGATGTCGATGGCGTTGGCGAGGAGGAGGGAGA
TTGGGTCTGTTTGGAAGAGGGACGCGACTTCCGAGACTTTGAGGTCGGTGTAGAGCGTGTAGCCGAGTAGGGAGTTGCACGTGTCG
TTGCTTGAGCACGGCTCGATTGTTGATTTAGCCGTTGTTGATGTGAGGAGTAAGCTCGAAGCTAGGAGGAGAAGGACAATCTCTCT
CATGCTCTCTCTCTCTATTACAGAACAATGGACAGAGTAAGAAGTCTCAGGAGTTTGGTAGAGATAGAATCTTTCTTCTTGTTGAG
GAGAGAGAGTGAGAGTCAGAAGAAAAGTAGAAACTTTTTCGAAACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002890470 peptidoglycan-binding LysM domain-containing protein [Arabidopsis lyrata subsp. lyrata]16743e-184
NP_564153 LysM domain-containing GPI-anchored protein 1 [Arabidopsis thaliana]16654e-183
NP_177886 LysM domain-containing GPI-anchored protein 2 [Arabidopsis thaliana]14361e-156
XP_002887693 peptidoglycan-binding LysM domain-containing protein [Arabidopsis lyrata subsp. lyrata]13813e-150
XP_002300994 predicted protein [Populus trichocarpa]13519e-147

Swiss-Prot top hits (Blast detail)Scoree value
Q93ZH0 LysM domain-containing GPI-anchored protein 116651e-184
Q6NPN4 LysM domain-containing GPI-anchored protein 214365e-158
O23006 LysM domain-containing GPI-anchored protein 22251e-017
Q8H8C7 Chitin elicitor-binding protein1911e-013
O10341 Uncharacterized 29.3 kDa protein1561e-009

TrEMBL top hits (Blast detail)Scoree value
Q5XF34 At1g2188016652e-183
B9GU52 Predicted protein13516e-147
B2ZAQ1 Peptidoglycan-binding LysM domain-containing related protein13311e-144
B9RJ77 LysM domain GPI-anchored protein 1, putative13302e-144
B9H7D8 Predicted protein (Fragment)11284e-121

Arabidopsis top hits (Blast detail)Scoree value
AT1G21880.2 LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)16651e-185
AT1G77630.1 peptidoglycan-binding LysM domain-containing protein14365e-159
AT1G21880.1 LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)13272e-146
AT2G17120.1 LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR)2251e-018
AT2G40070.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 94255 Blast hits to 49644 proteins in 1573 species: Archae - 225; Bacteria - 11215; Metazoa - 37735; Fungi - 21320; Plants - 3339; Viruses - 2662; Other Eukaryotes - 17759 (source: NCBI BLink).1353e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information