RadishBase

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Information for unigene UN33648

FASTA Sequence

Unigene ID: UN33648	Length: 1234	SSR
ACAAGATAATTATTTAAAATATACCATAAGATAATAAAGCGAATTACGAGGATGTTTCAATATTAGTCTTTATACATTCTAACAAA GTGCAAGAACATAGATAGACCATAAATTATTATTAGAACTATATACACAAATTGAAAAAGGGGAACATCAGTGGGGTTTAGATTGA GGAAGCACCAAATGTGTTCTCGCCACTGTAAGTGATGTATAGGAAGCCATCTTGGTCTTTCTTCTCCTCATAGACGCTTGACATAA TCTCTCCTGTAGGAGGAAGGACATTATCTACGAATATGAAGATAGCTTTTTCTGCACTTAGTTTGATTCTATTCCGAATCACATAC ACAAATTGCCCAACTGTTAGGTCTGATGGCACAAGGTATTTTTTCTTGTCAATGTCTGGGATATCACTTTTCTCAGCCTTTTCCAC AATCACCTGCAACAAAATGCACACCATTCATTGAGTGATCAATACAATGTAAACAAAATCTTGAAGCAGAAACAGGATTAGATTCT CAGACAAATCTAATGTTCTGTTGTTTGAATGTGTAATCTAGTTCTCATTCTTTTATCTATTAGCAGACAAAAAGAAAAAGAAGAGA AACTTGTGATCAGCAACATACAACAACATAAATGCCACAAAGTCAGAAACTTGTGATCAGCAATATACAGAACACATGATCCCATT AATTGAGTGATCATTATAACGTATAAGATAAGTAAACAAAATATTCAAGCAGAAACAAAGGGTTGAAGCAGTATAGGATTATCAGA CATATCTAATGTTCGATTGTCTGAATTTAATCTAGTTCTGACTCTTTTATCTATTAGCGGAGGAAAAGAACAAGAAGAGAAGCTTG TGATCAGCAACATTTATATTAAAAAAAAACATGAATGCCACAAAGTCAAAAATTTGAGATCAGCAACATACAAATCCAAGATTCAT GATCATGTTGGTGCAATTTAATACAGACATAGGTATAAAGGCATAATAAACCCTTAAAGGAAGAGACCATACCGGTATTCCATCAG GGTACTTCTCTATGATCCTTCCTGCTTCAGCTTTCCTCGAAATCGTTATCAAGCTTAAAGCTGCTGCCTTTATTCATCTTTACTTA GAGAGATTGATGGAATGAAAGAAGAAGAAGAAGAAGATGTTTGATTCTTGTGGAGAAAGTCACAAACGCAACCTGTTTCTTTCTTG TTACTTCTATGATTGGATAATAATGATTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAB88391 autophagy 8e [Arabidopsis thaliana]	429	6e-040
NP_182042 autophagy-related protein 8e [Arabidopsis thaliana]	429	6e-040
XP_002880163 At2g45170/T14P1.2 [Arabidopsis lyrata subsp. lyrata]	429	6e-040
XP_002303509 predicted protein [Populus trichocarpa]	409	1e-037
XP_002868127 hypothetical protein ARALYDRAFT_915092 [Arabidopsis lyrata subsp. lyrata]	409	1e-037

Swiss-Prot top hits (Blast detail)	Score	e value
Q8S926 Autophagy-related protein 8e	429	3e-041
Q8VYK7 Autophagy-related protein 8f	404	2e-038
Q9LZZ9 Autophagy-related protein 8g	391	7e-037
A2YS06 Autophagy-related protein 8C	384	4e-036
Q6Z1D5 Autophagy-related protein 8C	384	4e-036

TrEMBL top hits (Blast detail)	Score	e value
B9GVG5 Predicted protein	409	9e-038
B9SIT8 Gaba(A) receptor-associated protein, putative	407	1e-037
C6SX89 Putative uncharacterized protein	405	3e-037
A9PID1 Predicted protein	404	3e-037
C6TCK7 Putative uncharacterized protein	402	6e-037

Arabidopsis top hits (Blast detail)	Score	e value
AT2G45170.1 AtATG8e; microtubule binding	430	2e-042
AT2G45170.2 AtATG8e; microtubule binding	430	2e-042
AT4G16520.1 ATG8F (autophagy 8f); microtubule binding	404	2e-039
AT4G16520.2 ATG8F (autophagy 8f); microtubule binding	404	2e-039
AT3G60640.1 ATG8G (AUTOPHAGY 8G); microtubule binding	391	6e-038

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			100%

Unigene Members	Member information