Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN33737

FASTA Sequence
Unigene ID: UN33737Length: 1326 SSR 
CGAAACGTCTTAAAGAATTATGTTAGGAATCTCACATGGAAACTATAAAAGTTAACGTAAAGTACCCAGTACAAAATGATCCAAGA
AGGATAGTACAAGTGAGTAATATGTTGTTGATGCATATGTTACTGTTGTTGTGATGCCTAAACAAATTACCATTTTCTAGAGAATG
TGCCAAAATGTCACTTTGTCCAATGAACATAAGTTAATATACTCATTGGCAACTATTTTGTCTATTTCTAAACTAAATTTATACAA
AGCTTAGCATATTCTAATCCAACTTAACACATTATAATCAATTTTATCTATAAAGAAAATGAATGAAGTAGCCGCCGGCAACAGTG
AAGTCTCAAGCTAAATAAGGAACTCCAAGAACAAACAAAAAACTCTTTTCTCTATGCCACATGAAGATAATGCAATATCTCTTTTT
TTTGTGTGTGTGTGTGTGTGTGTTTTCACATATTCGAGATAAGAAGTTAAGAAAAGAGCTAGAGAGAGAATGCTAGTACCTAGGGT
AGCTGGAAGACACCCAAAGCAAAACATAGCTTAAGAGCGAAGACATGACTTTCAAAACCTCTTGGTCCTTTGATGAAGGGCGGGAC
CACAGATACCATCAAGAAGGTCCCAATCAGCCACGAGAAGATGAAAGATCCACTCCCGTAAAGGAAAGACCAGAGTTTCTTCTTCT
TCTTCATCCTTTGGTGGATGAAGTAAAACGTAGCTATCACCGATAACAAAACCTGCAGAGTGGGTCCTTCTTCTGTGGGGAACAGA
ACCGTGAGAGCACCGAGAACTGCAAAGGTGACAGCCGTTTTGACAAGGAAAGCAGTGGCAGGAGTTTGGAATCTCTGGAAGAAAAA
TATCGCAGCTTTGGACTGTCTGACTTCCCGGACCTTCTTGGTCAAGTCGATCTTGGGGTTCTTCCTCTGATGGAACTTGTGCATGA
TAATCTTGTCATGAGCTGATTCGATAGCGTCAACACTGGGTTTGTGAGCAGCGTAGTGGTGAATGAGAAAGTTCCTGGCTCCTTGA
ATCTCATCCTCTGAGGCCATCCGGCTTATCCCAAGCCGCTTGTATGGATCTTTGACATTGATCCGAGGAAAAACAACTGAACCTAT
GGAGTAAGAGTAAAAGCCTGAGAGCTTCTCTGAGATGTACCAGAACGACCTGAACGCCAGCGAAAGTGAAACCTGGGCGGAGTTAC
GGTTAGCCCGGACGCATTCAACATCTCTGGCAAAGAAGACCACCGGAGCTTTCCTCCACAGCAACAAGTTCAATCCTAGAGTAGAA
GAGGAGACAGTCTCGCCGATGAAAACAGTTTCCCCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002876072 hypothetical protein ARALYDRAFT_485468 [Arabidopsis lyrata subsp. lyrata]8123e-084
CAB62636 putative protein [Arabidopsis thaliana]7998e-083
NP_566946 uncharacterized protein [Arabidopsis thaliana]7998e-083
XP_002310290 predicted protein [Populus trichocarpa]6752e-068
XP_002531507 conserved hypothetical protein [Ricinus communis]6572e-066

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q94C78 Putative uncharacterized protein7996e-083
Q9SD32 Putative uncharacterized protein F24M12.1807996e-083
B9HFI3 Predicted protein (Fragment)6751e-068
B9SZT8 Putative uncharacterized protein6572e-066
B8AKA7 Putative uncharacterized protein5702e-056

Arabidopsis top hits (Blast detail)Scoree value
AT3G51140.1 INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: CDF1 (CELL GROWTH DEFECT FACTOR 1) (TAIR:AT5G23040.1); Has 133 Blast hits to 133 proteins in 42 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).7993e-085
AT5G23040.1 CDF1 (CELL GROWTH DEFECT FACTOR 1)2894e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information