![](/radish/img/header.png) |
Information for unigene UN33904
FASTA Sequence |
Unigene ID: UN33904 | Length: 1178 |
SSR | | AAGTCAAATAAAATTCTAAACATTAAAATATTTTATATAATAAAAAGGGATGGAGTAATAATTTAAGTTTCCAACTAGCTATGAAG
TATCAATCAAGTTTGATTTATTAAATAAATCAACTAATCAAATAAAACATTCGTTTCTCTACAACAGAGAGCTTCAACATGACCAG
AGAAACCAAGCTCTCTCTCTACCAAGTCCTTTTTCCACCATGAGGTACAAAGTTGGAGGTCGATCTTGGCCGTTTATCACCAAAAC
CACCACGTCCTCCTCCTCTTGACCGGAAACTACGTCCACCACCACCACCACCACCAGAAGATCGGACTAGTGCGGAGAGTCTGGGA
GGTACAACTTGACCAGCTTCTTGAAGGATCTTGATAAGCTCTCTTGCAAACTTAGCATTGTCATGTGTAAAGAATGTCATGGCCAT
TCCTTTAGCTCCTGCACGCCCGGTTCGACCAATCCTGTGGATGTAGTCCTCCAATGAAGTTGGGAAATCATAGTTAACCACACACT
TTATGTCCTTCACATCAAGTCCCCTTGCTGCTACATCAGTGGCAGTCATTATCGGGCTTCTACCGCTCTTAAATTCTGACAAGACA
CGATCTCTTTCCGTTTGGTTTTTGTCACCGTGTATGGCAAGAGCTGGCCATCCGTCCATTCTCAATTGTCTAGTCACTTGATCACA
ACCTCTCTTTGTCTCCACAAATATTAAGATTTTGCTTCCATCCATCAACTGCTTAAGCAGTGTAAGGAGCCTGGTGTATTTCTCTG
GCGTCTGTACAATCTCGATTACTTGGTTAATAGACTGGTTAGCTTTAAGATCTGCTGATCCAATAATGGCCTTATATGGATCTCGT
AGAAACTGCCTGGCGAGAGTTTCAACTTCTCGTGGCCATGTTGCACTCCAAAGCAGTGTTTGTCTATCAGGTCGGATCTGAGATAC
AATTTTTCTAATTTGGGGTTCAAATCCCATGTCTAACATTCTGTCAGCCTCATCCAAGACAAGGTAAGTCACCCTCTTCAAATCAG
TGTGTTGGCACTCCAACATATCGATCAACGACCGGGTGTAGCAATCACAATCTCAACACCTCTTCTGAGATCGTGAATCTGACGTC
CTTTAGGAGCACCACCATAGATGCAAGTGCTTCTAACACCAGATCGCAGCCCGAACTTCC
|
|
|
GenBank top hits (Blast detail) | Score | e value |
BAB10554 ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] | 1399 | 2e-152 |
NP_974985 DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana] | 1399 | 2e-152 |
XP_002866536 hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp. lyrata] | 1394 | 7e-152 |
XP_002277894 PREDICTED: hypothetical protein [Vitis vinifera] | 1192 | 2e-128 |
XP_002318665 predicted protein [Populus trichocarpa] | 1162 | 6e-125 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q8W4R3 DEAD-box ATP-dependent RNA helicase 30 | 1399 | 8e-154 |
Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 | 1063 | 7e-115 |
Q5QMN3 DEAD-box ATP-dependent RNA helicase 20 | 1002 | 9e-108 |
Q9C718 DEAD-box ATP-dependent RNA helicase 20 | 996 | 4e-107 |
Q2U070 ATP-dependent RNA helicase dbp2 | 912 | 2e-097 |
TrEMBL top hits (Blast detail) | Score | e value |
B9I3D5 Predicted protein | 1162 | 4e-125 |
C0PQ26 Putative uncharacterized protein | 1114 | 1e-119 |
A9S9X0 Predicted protein | 1086 | 3e-116 |
C5XFL3 Putative uncharacterized protein Sb03g043450 | 1084 | 4e-116 |
B9IEX8 Predicted protein (Fragment) | 1071 | 1e-114 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G63120.2 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 1400 | 5e-155 |
AT1G55150.1 DEAD box RNA helicase, putative (RH20) | 996 | 4e-108 |
AT5G63120.1 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 865 | 6e-093 |
AT5G14610.1 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding | 754 | 4e-080 |
AT3G01540.2 DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase | 736 | 5e-078 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|