 |
Information for unigene UN33904
| FASTA Sequence |
| Unigene ID: UN33904 | Length: 1178 |
SSR | | AAGTCAAATAAAATTCTAAACATTAAAATATTTTATATAATAAAAAGGGATGGAGTAATAATTTAAGTTTCCAACTAGCTATGAAG
TATCAATCAAGTTTGATTTATTAAATAAATCAACTAATCAAATAAAACATTCGTTTCTCTACAACAGAGAGCTTCAACATGACCAG
AGAAACCAAGCTCTCTCTCTACCAAGTCCTTTTTCCACCATGAGGTACAAAGTTGGAGGTCGATCTTGGCCGTTTATCACCAAAAC
CACCACGTCCTCCTCCTCTTGACCGGAAACTACGTCCACCACCACCACCACCACCAGAAGATCGGACTAGTGCGGAGAGTCTGGGA
GGTACAACTTGACCAGCTTCTTGAAGGATCTTGATAAGCTCTCTTGCAAACTTAGCATTGTCATGTGTAAAGAATGTCATGGCCAT
TCCTTTAGCTCCTGCACGCCCGGTTCGACCAATCCTGTGGATGTAGTCCTCCAATGAAGTTGGGAAATCATAGTTAACCACACACT
TTATGTCCTTCACATCAAGTCCCCTTGCTGCTACATCAGTGGCAGTCATTATCGGGCTTCTACCGCTCTTAAATTCTGACAAGACA
CGATCTCTTTCCGTTTGGTTTTTGTCACCGTGTATGGCAAGAGCTGGCCATCCGTCCATTCTCAATTGTCTAGTCACTTGATCACA
ACCTCTCTTTGTCTCCACAAATATTAAGATTTTGCTTCCATCCATCAACTGCTTAAGCAGTGTAAGGAGCCTGGTGTATTTCTCTG
GCGTCTGTACAATCTCGATTACTTGGTTAATAGACTGGTTAGCTTTAAGATCTGCTGATCCAATAATGGCCTTATATGGATCTCGT
AGAAACTGCCTGGCGAGAGTTTCAACTTCTCGTGGCCATGTTGCACTCCAAAGCAGTGTTTGTCTATCAGGTCGGATCTGAGATAC
AATTTTTCTAATTTGGGGTTCAAATCCCATGTCTAACATTCTGTCAGCCTCATCCAAGACAAGGTAAGTCACCCTCTTCAAATCAG
TGTGTTGGCACTCCAACATATCGATCAACGACCGGGTGTAGCAATCACAATCTCAACACCTCTTCTGAGATCGTGAATCTGACGTC
CTTTAGGAGCACCACCATAGATGCAAGTGCTTCTAACACCAGATCGCAGCCCGAACTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB10554 ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] | 1399 | 2e-152 |
| NP_974985 DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana] | 1399 | 2e-152 |
| XP_002866536 hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp. lyrata] | 1394 | 7e-152 |
| XP_002277894 PREDICTED: hypothetical protein [Vitis vinifera] | 1192 | 2e-128 |
| XP_002318665 predicted protein [Populus trichocarpa] | 1162 | 6e-125 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8W4R3 DEAD-box ATP-dependent RNA helicase 30 | 1399 | 8e-154 |
| Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 | 1063 | 7e-115 |
| Q5QMN3 DEAD-box ATP-dependent RNA helicase 20 | 1002 | 9e-108 |
| Q9C718 DEAD-box ATP-dependent RNA helicase 20 | 996 | 4e-107 |
| Q2U070 ATP-dependent RNA helicase dbp2 | 912 | 2e-097 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9I3D5 Predicted protein | 1162 | 4e-125 |
| C0PQ26 Putative uncharacterized protein | 1114 | 1e-119 |
| A9S9X0 Predicted protein | 1086 | 3e-116 |
| C5XFL3 Putative uncharacterized protein Sb03g043450 | 1084 | 4e-116 |
| B9IEX8 Predicted protein (Fragment) | 1071 | 1e-114 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G63120.2 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 1400 | 5e-155 |
| AT1G55150.1 DEAD box RNA helicase, putative (RH20) | 996 | 4e-108 |
| AT5G63120.1 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 865 | 6e-093 |
| AT5G14610.1 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding | 754 | 4e-080 |
| AT3G01540.2 DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase | 736 | 5e-078 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
