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Information for unigene UN34186

FASTA Sequence
Unigene ID: UN34186Length: 1062 SSR 
CGTTGAAATGTTAACTTTATAACAACAAAAAAAGGTTGTACAATCTCATGATCCTAAACTAGGGGATCAGGAGAAGAGAAAACAAT
GAGATGAGCTTTGAGCACAAGAATGCTCTACTTTGAAGTTGAAACAAATGGAAAAGCAACAGAAATAGATAAGTGGGAGAGATCTC
TTCTGTTATGGTGGAGTCAAAGCTAGCGTAGCACAGTCTTGGTGTTCCATCTATTCAGTCCTTCATTCAATACCCCATCCCCTTTT
CCATGATGCAGCGCTATCAATCGATTCTGCATTTCGCGGTAGACAGACCGAGCAATGTACACTGCCGAGTGAGGAGGATTAAGATA
ACGACGTCCATTTCTTTCGCGCCAAGTCCAATAAATCGAAGCTTGGAAAGTCATCTTCACTATCTGTGTATCTATTTTGGGGAGTC
TGTTGTTTCTGAGACTCGCAATAGTCCTGGACCAGTCAGGGTTAATGCGGCCAGCTAGGAAAGGTGCCATCAACATCGTCCAAATC
GTGTAGGTGAAGGGACAAGCAAAAAATAGGTGATCACGCGTTTCATCAGGTTCGCCACACAATAGACAGATCTGCGTGTGGCCCCA
TTGTCTCATTCGATCTCCGGTGTCCAGTCTGTTTCTACACGCTACCAGGTGATGAACGCCTGTCGAGGAAGAGCTTGAGGAAACCA
AACTATGTTGGACCAGGCCACCACAGAATGTGTGGATCGGAGTTGCTCCCAAGTAGCTTTCGATACAAACCTCTCCTCATAAGTAT
CCTGACTCTGCTTCCAGAGAGGCTCCTCATAAGTTGGTTTCTTCTTCTTCTTCTTCTTCATGTTGGACTTTTCTTGAGCTTCTAAA
TCACAATAATCAACTACTCTCTCTCTCTTTCCCGTTTCTCTCTTACCATTATCATCACCATCAGAGTGTGTTCTGCGCTTCTTCGA
TTTCTATCCTTCACGCTCCACAGCAAACGCATCCTTTTTTCCTCGGCTCTTCTTCATAGATATTCAAACCCTTTTCTGGGGCGTTA
ATCTGGATTGAGATTTCCCCCGTCTGTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877500 predicted protein [Arabidopsis lyrata subsp. lyrata]3166e-027
XP_002865536 hypothetical protein ARALYDRAFT_917542 [Arabidopsis lyrata subsp. lyrata]2834e-023
AAD12028 putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]2541e-019
AAC63678 putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]2522e-019
AAV68826 hypothetical protein AT1G21330 [Arabidopsis thaliana]2494e-019

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O64473 Putative non-LTR retroelement reverse transcriptase2546e-020
O82216 Putative non-LTR retroelement reverse transcriptase2521e-019
Q5Q0G1 Putative uncharacterized protein2492e-019
O81068 Putative non-LTR retroelement reverse transcriptase2465e-019
O65244 F21E10.5 protein2431e-018

Arabidopsis top hits (Blast detail)Scoree value
AT1G43730.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 562 Blast hits to 549 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 562; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1836e-014
AT5G18880.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 393 Blast hits to 389 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1836e-014
AT1G60720.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33710.1); Has 408 Blast hits to 400 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1594e-011
AT4G04650.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: stromule; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43730.1); Has 608 Blast hits to 598 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1532e-010
AT4G05095.1 unknown protein1424e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information