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Information for unigene UN34400

FASTA Sequence
Unigene ID: UN34400Length: 738 SSR 
GAGTGAAAGATTTCTTAAAAATTGGTTAATATTTTACAGAGTACACATTGTATTATATTGTTTTTGATGGATGAAAATGAAAGAAA
GCCTTCACCCTCTGGTTCGATCTAGCGTCGCCGGCAGATTCTAAGTTTCCTGGTTATGAGATATAATCTAAGATTCCTGAGCATAG
ATTCTCTCCGTGGTTATTGAAAGTGCATCTTCAACGAATGTATCATCATCAAACCAAAAAAAACTCATGTCTTTTTAAAAGTAATA
CAATGGTGGCGATAATACAATGGTAAGGATCAAACGGTGTTGATAGTATCAGTAAGACAGCGGAGAATGCAACCGAGACCAGCTCT
CTCAGTGAGTTTCTCGTGAATCTTCAAACACTGATCGCATGTAGGTCTGTCCCCAGTGGAAAGCCCTCTGTATAAGTACTTCATGA
GAATGTCGTAATACTCAACATCGAGGGCATTAAGCATCCCCTCAATGTCCTTAATCGCCATTAAAGCTCTGTGCACAACTATCCAA
TTAGCCGACTTGCAACGCTCATCGAGAGTTTTAGGAGGAGAACCTTCAAGAGCCGTTTTCAGAGCTTCTACTGGTTTATACTGTTT
GAGTAAGCTTTCAATCTTGGTCGATTTGGTTTCGATCCTCGCGATGATTGCCTCTGCCTCCACAAATCCACCTCCTCCTCCCGCCA
TTCGATCTCTCTCTCTCTCCCCCTCTCTCTCTCCAGCAAATTGATCTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAB77741 putative actin polymerization factor [Arabidopsis thaliana]6174e-062
NP_567216 actin related protein 2/3 complex, subunit 5 [Arabidopsis thaliana]6112e-061
XP_002875051 hypothetical protein ARALYDRAFT_490565 [Arabidopsis lyrata subsp. lyrata]6051e-060
NP_001119503 ARP2/3 complex 16 kDa subunit (p16-Arc) [Arabidopsis thaliana]5701e-056
XP_002326873 predicted protein [Populus trichocarpa]5502e-054

Swiss-Prot top hits (Blast detail)Scoree value
O96626 Actin-related protein 2/3 complex subunit 51494e-009
O15511 Actin-related protein 2/3 complex subunit 51422e-008
Q5R516 Actin-related protein 2/3 complex subunit 51422e-008
Q4KLF8 Actin-related protein 2/3 complex subunit 51422e-008
Q3SYX9 Actin-related protein 2/3 complex subunit 51404e-008

TrEMBL top hits (Blast detail)Scoree value
Q9M117 Actin-related protein 2/3 complex subunit 56173e-062
Q941F3 Actin-related protein 2/3 complex subunit 56111e-061
B3H6Y2 Actin-related protein 2/3 complex subunit 55708e-057
B9MVA9 Actin-related protein 2/3 complex subunit 55502e-054
A5AQ06 Actin-related protein 2/3 complex subunit 55492e-054

Arabidopsis top hits (Blast detail)Scoree value
AT4G01710.1 CRK (CROOKED); actin binding6127e-064
AT5G65274.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of actin filament polymerization; LOCATED IN: cytoskeleton; CONTAINS InterPro DOMAIN/s: ARP2/3 complex 16 kDa subunit (p16-Arc) (InterPro:IPR006789); BEST Arabidopsis thaliana protein match is: CRK (CROOKED); actin binding (TAIR:AT4G01710.1); Has 276 Blast hits to 276 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 39; Plants - 19; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).5714e-059

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information