 |
Information for unigene UN34407
| FASTA Sequence |
| Unigene ID: UN34407 | Length: 1606 |
SSR | | GCTTAACTGTAAGTATCATTATAATGAAAAGGAGTTTTACAAAGTAGAAGCTTATCTCACAGAGAGTGTCTACTGATTACTTATTT
TTGGTGTGAATGAACACAATGACAAATATTCCGAAAACCAAACATAAACGTAAACGCACATCTTCCGATACTAATGAGCGCCATTC
ATAGCTTGGAGGCATCAGCAGTGATCCGATGGCTGAGAGCAACAGCGGCCTTGGAACCGTTAGGACGGCCAAGATGCTTGCTGATG
AAATCTCCAGCAGCTATAAGCTTTCCCAAATCCACGTTGGTTTGGACCCCCAAACCGTTTAACATGTAAACCACATCTTCTGTGGC
TACATTTCCTGACACTCCTTTTGCATATGGGCAGCCCCCTAATCCAGCAACCGATGAGTCTACTATGTTTATTCCCATTTGGAGAG
ACACCAATATGTTTGCAAGAGCTTGTCCATATGTATCGTGGAAGTGAACAGCCAGCTTTTCCGCTGGCACAGCTGCCATCACCGCT
TCAAGCATGGGAACCACAGAACCAGGAGTGCCGATTCCAATTGTATCACCAAGAGAAATCTCAAAGCAGCCCATGTCATAGAGCTC
TTTAACAACATGCGCTACTTTTGAAGGTGGAACCGCTCCTTCCACTGGACACCCCACCGCGCAAGATACATACGCACGGACAGGAA
AGGAATGCTCCTTTGCAGCGGTGGAAACAGCACGATATCTCAAGAGAGACTCTTCGATGGTACAGTTAATATTTGACAAAGAGAAT
GACTCGGAAGCCGATGCAAAGATTGCAACTTCCTTAGCACCTGCAGACACAGCTGCTTCAAAACCTTTAAGATTGGGAGTGAGAAC
TGGCAATCGAGCCGCCCCATGTAGAGTATTAACTGCGTCCATTACATTCTTTGCATCTGCAAGCTGGGGAACCCATTTAGGAGAGA
CAAAGCTAGTAGCTTCGACAACGGGCAAACCAGCAGAAACCAATCTCCGAATGAGTTCGACCTTAACAGAAGTGGGAACAATGTTT
TTCTCGTTCTGAAGGCCATCCCTTGGACCAACTTCTACAATCTTCACAAACTTGGGTACTTCTCTAAGGAGCTGCTGCTTGTTAAG
TGAATGTGGTAAGGTGTGAAAATGTTTGGATAGAGTGCCAGAAACTGATGAGGTCCCAAGTACATGTAGTCGTTGAGATACTTTCC
GAGAATGCATACAGAAGCTTTTACCATCATTGCAATCTGTTACCCTCCTCTGGATCCTGTCTATGGAGCTCAGCTCCTCCAAACTA
GACATGGTGGTGGTGGTGACTGGAATAGACGGATGATGATGATGATGCAAGTTGTTTGTTAAAAAACTCTTGCGCCATAAAGATTG
GGCTCTTCTCACCCCATTCCTCTGCATCGGAGAAAAGAGTGATTGATTCCTCCGGAGAATGAAATCAATGGAGGCGGCAACTTTAA
TCTCCTCTAATTCTGGTTGGGACTGTCCCTCGACCCCAATAATTTGACTATAATCTCATCTGCCGTACTACAACCTCCTGTTATAA
AAATGACGAAAGACGACGGAACTCTTACATCATTCTTTGGATCAACACGACAACGCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880836 hypothetical protein ARALYDRAFT_481553 [Arabidopsis lyrata subsp. lyrata] | 1455 | 9e-159 |
| NP_565629 Hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] | 1419 | 1e-154 |
| NP_850087 Hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] | 1419 | 1e-154 |
| XP_002263865 PREDICTED: hypothetical protein [Vitis vinifera] | 1289 | 2e-139 |
| XP_002314006 predicted protein [Populus trichocarpa] | 1270 | 3e-137 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O81027 Hydroxymethylglutaryl-CoA lyase, mitochondrial | 1419 | 6e-156 |
| P97519 Hydroxymethylglutaryl-CoA lyase, mitochondrial | 986 | 9e-106 |
| P35915 Hydroxymethylglutaryl-CoA lyase | 982 | 3e-105 |
| Q8JZS7 Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 | 974 | 2e-104 |
| P38060 Hydroxymethylglutaryl-CoA lyase, mitochondrial | 968 | 1e-103 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9HNI0 Predicted protein | 1270 | 2e-137 |
| Q2PF06 Putative hydroxymethylglutaryl-CoA lyase (Fragment) | 1257 | 6e-136 |
| B6U7B9 Hydroxymethylglutaryl-CoA lyase | 1250 | 4e-135 |
| B4FFY3 Putative uncharacterized protein | 1243 | 2e-134 |
| B8AC86 Putative uncharacterized protein | 1243 | 2e-134 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G26800.1 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative | 1420 | 4e-157 |
| AT2G26800.2 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative | 1420 | 4e-157 |
| AT2G26800.3 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative | 856 | 1e-091 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
