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Information for unigene UN34418

FASTA Sequence
Unigene ID: UN34418Length: 1443 SSR 
AGAGCAACTAAGTCAATCACAAAAGATCATAACTGATACATAGTGTCTTGATTAAAAACGAGACAAAACAAAGGAAACAAACATTA
ATGAACAGACTTGGAGAAAGTGACACAAGAAGGGTGTCAATTTGGGGGGCTAGGCACTGGATCCATCCACTGTGAAAGCACATATT
GTGATAATGTAAGCACGGAAGCTGGATCATATAAAGCTTCCATACTGTCCTTAGAATCGGAAGTGTTTATGCGCCAACTACCTCCA
CCATCACTCCAGGTCTCCGATTCCCAACGAAGTGTAAACTCTTGTGTCCTTAAGTTACCAGATACCACGCAACTGTGTTGTCGCCT
CCATAGATAGACCAAATCAATATCAAACGGATTCATTCCCAAAGGAAAACAATCGACATCAAACCGGACAGAGGCCATGTTGATCT
CCTTCCTTGTCAACTGCCACCATTCTCCATCGGAGTTGTTACTCTTCAACTTCCAAACCCTCAATCTTTGATACAATAATTCAATG
TATATAACATCTCCTCGTGAAGTTGTCAAACATCTGTTAACGTAGGTGTTATCCGGGACAGGGAGAGGTATAACCCGACACTGATC
ATCGTCTTCTCCACCATAAAAGTCATAAGATACAAGGACCCCAGGGCCAGTATCATCATCATCATCATCCAGTCTCTTCTCGCACA
CATAAAGCATCCCGTTGAGATTCAAGGATGTGTTTAAACCAGCGCGATAGAGAGGAGTAGAGAAGCAAAGTGTCCTGAAAGTCCAT
GCCCCTGTCTCCGAAGAATACACATAAACTCTCCATACATAGGCTCTCTCTCTAGTCTCAGTAATCTTTGCACAAGTCATAACCAC
CTTGAAGCTTGAAACGACACCGTTCACAAGACGAGTGACCAAACCAGAGGGCACGGTTCTACGTTCAGGAGGCGGAGGGATCTCAA
CCCATTCTTGTGAAACTGGATTACCCACGATAGATTTGGTTTTGATATTAATGTTATCAGAGCAGAAGAGTACTTCAATCCAAACC
AATCCATGTGAAGAATCTACGTAGAAGTAATGGTCTCCGTTGGGATAGGGTTGAAAAGGCAAGATACAAGAGGCTGGAGATTTGGG
AAGAGCCCATCTCTCGCATCCATAGAAGCCTATAGCTTCGGTGATGGATCTACTAGACTGGATTGGGAAGATTAGAGACCAGGAGG
TAGATGAGTTTCGGTGAAGAGAGACGAAGAGGGTGCGGAAGCAGGGCGATTCTATCAGTGATCTCCACTCTTTGCACACCGATTTA
CATCTCGCGATGCTTCTCAAAGGTAATCTCGCAATGATCTCCATGGATATAACATCTGGGATCGATCTTCCTCTTCTCATCTCCAT
TGGGAGTTTGCTCATTCTCGTCACGGGATTAGGGTTCCGTTCACCACTCACCCTCACTGAAACACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002891550 hypothetical protein ARALYDRAFT_474131 [Arabidopsis lyrata subsp. lyrata]10543e-112
NP_175421 F-box protein [Arabidopsis thaliana]10005e-106
XP_002872466 hypothetical protein ARALYDRAFT_911256 [Arabidopsis lyrata subsp. lyrata]5077e-049
XP_002872649 hypothetical protein ARALYDRAFT_911615 [Arabidopsis lyrata subsp. lyrata]5032e-048
NP_193974 putative F-box/kelch-repeat protein [Arabidopsis thaliana]4898e-047

Swiss-Prot top hits (Blast detail)Scoree value
Q9LPM2 F-box protein At1g4999010064e-108
Q1PE57 Putative F-box/kelch-repeat protein At4g224304813e-047
Q9LU90 F-box protein At3g260103748e-035
Q9LIR0 Putative F-box protein At3g239702653e-022
Q9LMR4 Putative F-box/kelch-repeat protein At1g156802341e-018

TrEMBL top hits (Blast detail)Scoree value
A0MF89 Putative uncharacterized protein (Fragment)4842e-046
A0ME13 Putative uncharacterized protein (Fragment)2915e-024
Q1G3A3 Putative uncharacterized protein2915e-024
Q9LHA5 Genomic DNA, chromosome 3, BAC clone: T19D112441e-018
A0MEY3 Putative uncharacterized protein (Fragment)2281e-016

Arabidopsis top hits (Blast detail)Scoree value
AT1G49990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G26010.1); Has 182 Blast hits to 179 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).10073e-109
AT3G26010.1 F-box family protein3747e-036
AT3G28223.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G28330.1); Has 107 Blast hits to 106 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2913e-026
AT3G23970.1 F-box family protein2653e-023
AT1G15680.1 F-box family protein2341e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information