Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN34482

FASTA Sequence
Unigene ID: UN34482Length: 1330 SSR 
ATTTATTGATCAGAGTAAAAAGAATAAACATATACAAAGAATAGGATTCTAAATGCAGAAGCTATACAACGGTTGTAACAGTATCA
AAAATGAAAGATGATCGTTTTAGAACACTTCAAACCAGCGTCGCATTAGGCCTGCTAGCTTATGATCTGCCTTGTATTGAAGAGAG
CTGATTCGGTTTTGTATGGCCTTGTCAATGACTCGAACAGCTTGGTCCACAGTGCGAAACCCTTGCTGATGACGTCTCTCATTCCT
CTCCTTCCACATATAATAGATGCAGGTCTGAAAAACCATTTTGATGAGGATCTTGTCGATGCTCTCAAGGTCATTGTTAGTAATAA
ACTGCAAGGTAGTATCCCAATCTGGATCACTTCTACCACCACTTAACCGACCAGCAAGTGTATCCCAAACAGTGAAGGTGTACGGA
CAAGCAAAGAAGATATGATCCCTAGTCTCATCCGGTTCTCCACACATCACACAACTCTGTTGAATACCCCAAGCCCTCATACGATC
TCCTGTAGATAGTCTATTTTTCACTGCCAGCCATACTATGAATGAGTATCTAGGAACTTCTTGGGAAAACCACACACTTTTGCTCC
AGCCCACTCTACTTCTCCTTAACCTAATCTGATCATAGGTTCTACTCGATGAGAAATGTGGTTTATAGTTGTCCTCCGAGTACTTC
CAAAGTACCAGGTCGCTTCCATATTCATCATGCGGAACTCGCTCGTTCCTTATGCGGGCATACAAATCATGAAAATGTCGGTTTCG
ATGTCCTCGTATACTCCAGTGGGCCTGTGTTACTGCATCACTCACTCTAGCATTACGGGGAACCCCAAGGTAGTAAGTTCCTACAG
CACCAGTGATATCCAATAGCTTCCCTACCTGTAGCCAGTCATCAACCCAGAAAAAAGCAATGTGACCGTCATTTACCTCAAACCTG
ATAAACTGGTAAGCAACTGATCTCAATTTTAACAGCTTCCTCCAAATCCAAGATCCCTTCCAATCCTCCCTCACATCCCAGAAAGA
GTTCTGTCTCAGCAGATATTGCTGTATCCAAGAGACCCATAGTGATGCAGAGCTCGAAAAAATCCTCCAAGTTAAGCTCAAAGCAA
AGACCTTTGACGAATCATGTAACTTCCGGATACCAAGTCCTCCCTCATCCTTTGGACAGCATAAATCCTCCCAAGCCGCCTTAGCT
TTGTGAGTCTGAGTAGGTGACCCAGACCACAAATGATAAACGTTTCTTTATCAAACTTCATCTTTTCTCCATTTTCTCTCTCTCTC
TCTCTCCTTCGATCTCCTTCTTCACAAACACGTAATATAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAD95408 hypothetical protein [Arabidopsis thaliana]8321e-086
AAF98181 F17F8.5 [Arabidopsis thaliana]7917e-082
AAC33226 putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]7872e-081
AAG50886 hypothetical protein [Arabidopsis thaliana]7711e-079
AAC63678 putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]7702e-079

Swiss-Prot top hits (Blast detail)Scoree value
P0C2F6 Putative ribonuclease H protein At1g657501524e-009

TrEMBL top hits (Blast detail)Scoree value
Q56W17 Putative uncharacterized protein8329e-087
Q9FYJ4 F17F8.57915e-082
O81068 Putative non-LTR retroelement reverse transcriptase7871e-081
Q9C8I3 Putative uncharacterized protein F19C24.277711e-079
O82216 Putative non-LTR retroelement reverse transcriptase7701e-079

Arabidopsis top hits (Blast detail)Scoree value
AT5G18880.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 393 Blast hits to 389 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4543e-045
AT3G24255.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1); Has 2302 Blast hits to 2235 proteins in 74 species: Archae - 4; Bacteria - 15; Metazoa - 871; Fungi - 12; Plants - 1295; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).4411e-043
AT1G60720.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33710.1); Has 408 Blast hits to 400 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3567e-034
AT5G16486.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04650.1); Has 335 Blast hits to 332 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3504e-033
AT3G25720.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10613.1); Has 363 Blast hits to 328 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 363; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2492e-021

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information