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Information for unigene UN34554
| FASTA Sequence |
| Unigene ID: UN34554 | Length: 1158 |
SSR | | ATGACAATACAGGGTATCTTATATATATATGGCTTCAAGTATTGAAAACAAAGTTGGGTTTCCATCTCATTGTATTCAGAGATAAT
GGTAACACAATGAATTGACATTAATAAGCAAAAAAATCAGCTGGTCAGAAACAAATGAATCTGACAACCTCTCTCTCTCTCTCTCT
TTCTCTTTGCCTGCTTCATTTCATTCTGCTGTTACCTTGATCTGTCCATAGAGATTAGGGTCTGCTTCATAGTATACAACATCTCC
TTCATCGCTCACAAAATGATCTTCTTTAATACTTTTTGCTAAGATTCCCAGTAAATGTAATGGCAAAGGTCCAGACTTATCAGGCT
CCGGAGCCTTGGAAGATCGCTTTCGCTGAAGACAGGAGCTTGTCTCCGTGCTCTAGTAGCTTTCCTGAGTACCACTCCATGAAAAA
CTTTCCGTACTCGCTGTTCCATGTACCGTCTCTCCTGAAAAACTCAGTGTCTTCTGGGAGGTTCTTGTACTCGCCGGCGTCATGAG
GTCCGCTTGTTCCCCAGTTTGTTTTCCCTATTGATTCAGCATATGCTTGAAGCGACGATTTCATATACTTGTCATAGCACTGGAAC
TCTCCAATTCCTGGGAACCTCCATGTCCCATTGCTCTCAGGGTATGATGGGTATCTCAGTTCTCCACAAGGTCCCATTCCCACTTG
AATTTCCGCAATAACTCCTCCAATGTAATTATCGAATCTTTCACGGAAGCTCCTCATGAAATCTGAGTAGACCTGGATAGGTGTTC
TTCCTCTTAGGACAGGCACAGAGTCACACCCCAAGGAGATGTACTCAGGATTCCTTCTCCCAGATTTGTCTGTGTAGACAAGTTCA
GGGTTCTTGCTGATCTCTTCAAGCACCCACGGGGGCAAAGGAATACTGCAAGAGTCTCCAACGTTTCCTCCGCATTGATGGAAAGA
CATAACAACCTGGAGTTTGAGACCGTGCCTTTGAACCATCTGTATAAGCTCAGCATAGCCGTCCCAGTTATACTTCATAGGTCCAT
CTTTCTCAACCAATCCCCACCAAGCATCAACCATCACACCTTCCACACCGGCTCCTTTTAGAGCCATCAAACTAGCGTTCATGGCT
CTTGGTTTGTTCAAGTGTCCTGACATTGTTACCGTGTCTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567523 beta-amylase 3 [Arabidopsis thaliana] | 1455 | 6e-159 |
| CAB46051 putative beta-amylase [Arabidopsis thaliana] | 1455 | 6e-159 |
| AAK96508 AT4g17090/dl4575c [Arabidopsis thaliana] | 1455 | 6e-159 |
| XP_002868085 beta-amylase 8 [Arabidopsis lyrata subsp. lyrata] | 1447 | 5e-158 |
| BAJ34236 unnamed protein product [Thellungiella halophila] | 1434 | 2e-156 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O23553 Beta-amylase 3, chloroplastic | 1455 | 3e-160 |
| Q9LIR6 Beta-amylase 1, chloroplastic | 1012 | 6e-109 |
| O22585 Beta-amylase | 793 | 1e-083 |
| O64407 Beta-amylase | 786 | 1e-082 |
| P82993 Beta-amylase | 780 | 5e-082 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5AGI9 Putative uncharacterized protein | 1296 | 1e-140 |
| B9MTV8 Predicted protein | 1296 | 1e-140 |
| A9PGR1 Predicted protein | 1279 | 1e-138 |
| B9RUR8 Beta-amylase, putative | 1277 | 2e-138 |
| Q5F305 Beta-amylase | 1260 | 2e-136 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G17090.1 CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase | 1455 | 2e-161 |
| AT3G23920.1 BAM1 (BETA-AMYLASE 1); beta-amylase | 1012 | 5e-110 |
| AT4G15210.1 BAM5 (BETA-AMYLASE 5); beta-amylase | 771 | 5e-082 |
| AT4G15210.2 BAM5 (BETA-AMYLASE 5); beta-amylase | 771 | 5e-082 |
| AT4G00490.1 BAM2 (BETA-AMYLASE 2); beta-amylase | 749 | 2e-079 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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