RadishBase

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Information for unigene UN34555

FASTA Sequence

Unigene ID: UN34555	Length: 1176	SSR
CTTGAGTGAACCAAAAGTATGTCATAAATTATAACACACATCCATTTAAACAAATAGAAAAGCGTTTTCCTTCAGACAAAACTGTA TAAAGCTGATTGATTGAGTAAACAAACACGAAAAGGTGAGAAATCAAGACAGCTTTCTGGAGAGGTTAACCAAACCACTTCCAACG CAAGTGAGTATGACAGTTGCTGTATCAGGATCAGGTCTGAAGCTAAAAGTAACTCCCAAAAACTCCTTCAAGTTCCGCAACGTCTC AACTCCATAAGGAGATAACGTTCCCACTCGAACCTTTGACACGTCTTGTTGGCATAACGCACATAGTATAAACAACAATCCCTGGT GTGTTGAATCAACAACTCCGCCTTTCTCAATCTCCTGGAGAAGCCGTGAAGCTATTTCAACTCCAGGTGATTTTCCAGCGTGAGGG CCAGATTTGTGATCGTTGAAGATGTGAACATCAGGCAAGAGGTTGTTAAAGATTCCACGAGCTGCGAATCTCATGGAATGTTCAAA GTCGCTAGAAACTCTTGCAGAGAAAGTCCAACCACGTATCCTCTTCACCATCCCTTCCTCTACCCACTGGAACGCAGTAAGAGTCT GAACATTTGGAACAGTTAAAAGAACTTCTCCACCTCCCTCTGGAGCTACTCCACGGGCTTCGATTTTAAGATCTAAAACTTCCGAA GGACTCCAAAACGCTTTAAGATGTGTAGAGAAGCGTTACGGAATGTGTCAACGCTAGGGTCCTTTGCATCATCCGTAACTCCTTTA AGCCTAATCGAAAGTGGCTTCTTTCCAAATAATCCTAACAGAAGCAATGGCTCTAGAAAATAGCCCATGGATCGAGTCAGGGCACA ATTGTGAACCAAGTTCTTTCCTCCCATTATGATTCCAGGCTTGTACTTCAATCGTGTCCCTGTCTCGTTGACCTCAACGACGCAGT CATCGGAGACAGTCTCGAAGAGGCGGAGGAGAGACATCTCGTGACGGAGGAGGCCAGGAATCATGTCGTCGGCACGAATCTCATCG ATGATGATAGGCGTTGAAGAAAGGGTGGAGAGAAGTAGCCTCTGCCTGAAGCTCTGGCTTCCTTTCAAACGCTTGTAAGTCGTCTT CCCCATTCTCTCTCAATAACCTCTCTCTCTCTTTCTCTCTCCTCTGAAATTTTTCTTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002871987 predicted protein [Arabidopsis lyrata subsp. lyrata]	588	2e-058
NP_680196 RNA 3'-terminal phosphate cyclase-like protein [Arabidopsis thaliana]	563	2e-055
BAD42899 RNA 3'-terminal phosphate cyclase-like protein [Arabidopsis thaliana]	560	4e-055
XP_002313504 predicted protein [Populus trichocarpa]	557	8e-055
XP_002282375 PREDICTED: hypothetical protein [Vitis vinifera]	557	8e-055

Swiss-Prot top hits (Blast detail)	Score	e value
Q9C578 Probable RNA 3'-terminal phosphate cyclase-like protein	563	7e-057
Q54S38 Probable RNA 3'-terminal phosphate cyclase-like protein	329	1e-029
Q2KHX8 RNA 3'-terminal phosphate cyclase-like protein	315	4e-028
Q9Y2P8 RNA 3'-terminal phosphate cyclase-like protein	314	5e-028
Q9JJT0 RNA 3'-terminal phosphate cyclase-like protein	313	7e-028

TrEMBL top hits (Blast detail)	Score	e value
Q67XN9 RNA 3'-terminal phosphate cyclase-like protein	563	1e-055
Q683I1 RNA 3'-terminal phosphate cyclase-like protein	560	2e-055
B9HQ79 Predicted protein (Fragment)	557	6e-055
C6TAG4 Putative uncharacterized protein	556	7e-055
B9T7D2 RNA 3' terminal phosphate cyclase, putative	547	8e-054

Arabidopsis top hits (Blast detail)	Score	e value
AT5G22100.1 RNA cyclase family protein	563	6e-058

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			100%

Unigene Members	Member information