RadishBase

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Information for unigene UN34610

FASTA Sequence

Unigene ID: UN34610	Length: 991	SSR
GTCCAACACTCCGTTTATTACTATTATATTACACAATCTGTATAACATTATTACTTCATTACACTTAGACATTGTGACCAAGTTTC AACACAAAAGACTCAAAACACACACACACTAACACACTCTTTTTGCTAAACGATCACATAAAAAACATCTCTTAATTCAAACTCAC ATCACTTCCTCTGGAGAGTAACCAAATCAAGAGCGGCTCCAAACTTGGCATTCAAAGCTTGAGCACACCAACCATGTCCATCATCA ACCGTCGGCATCCTCACTTCAATCACAGGAACCACAGGGCTCTTCGACCCCGGCATCAACACCGCCGCAAAAACCCTCAAAGCATT CGAAGCATCAATGTCCATACAAACATTAATCTCAGGAACTCCTTTACGCGCCGGCGGGATCCCAACGATCTTGAAATAGCCAAGAA GATGATTCTCTCCAACACTCTCTCCTTCCCCTTCGTACACAACGATCAAAGCTTCCTTCTGATCATCATGAACCGTAGTGAAGAAG AGGTCCCTACGCGCAGGAACCATCGTGTTGCGTGGTATCACGGGCACGAACCTGTCTCCGCTGGCTCTGACTCCAACCGCGAGAGC CGTGGCTTGTATAGTCAAGAGGTCTAAGCTCCCGAACGGATCGTGTATCCCCGACGTCACAGCACCTTCCAAAGCAGCTCCTCTGA CCGCAGCTTCCAACGGATTCACTTCCTTGTAAATCTCTTCCTTCCTGCACACGTCAGAGACGATAGCTCTCACTTTAGGTATGTAA GAACACCCTCCGACCATTATCACATCGTCTATATCATCAACGTCCACTTTAGCATCCTTCAGACACTGCACAACAAGTCTCTCGCA CTCCTCGAACACTTCCCTGTTCACTTCCTCGAACTCCAACCTATCGAGAACCTTGGAAACCACGTCACCGTCACCCGAATCAACTT CTATCTGAACACTCTCCTGCTTCGACAGCCTGTGAACAGCGTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ34272 unnamed protein product [Thellungiella halophila]	1236	1e-133
XP_002862884 HSP70T-2 [Arabidopsis lyrata subsp. lyrata]	1215	3e-131
NP_180771 heat-shock protein 70T-2 [Arabidopsis thaliana]	1209	2e-130
AAM67201 70kD heat shock protein [Arabidopsis thaliana]	1198	3e-129
XP_002311619 predicted protein [Populus trichocarpa]	1032	5e-110

Swiss-Prot top hits (Blast detail)	Score	e value
P22953 Heat shock cognate 70 kDa protein 1	439	1e-042
P26413 Heat shock 70 kDa protein	436	3e-042
P09189 Heat shock cognate 70 kDa protein	434	5e-042
P27322 Heat shock cognate 70 kDa protein 2	433	7e-042
P29357 Chloroplast envelope membrane 70 kDa heat shock-related protein	430	1e-041

TrEMBL top hits (Blast detail)	Score	e value
Q9SKY8 70kD heat shock protein	1209	1e-130
Q8L8N8 70kD heat shock protein	1198	2e-129
B9HJX1 Predicted protein	1032	4e-110
B9HV59 Predicted protein	1019	1e-108
A5BR07 Putative uncharacterized protein	941	1e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT2G32120.1 HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2); ATP binding	1209	6e-133
AT2G32120.2 HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2); ATP binding	1209	6e-133
AT5G02500.1 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1); ATP binding	439	1e-043
AT3G12580.1 HSP70 (heat shock protein 70); ATP binding	433	6e-043
AT3G09440.1 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	431	1e-042

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			100%

Unigene Members	Member information