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Information for unigene UN34690
| FASTA Sequence |
| Unigene ID: UN34690 | Length: 1445 |
SSR | | TGTAGTGACTAATGAGAATCCGAACTGTCTCGTGGTACAACACATGCAACACAATAAGTAGGCATAGATGTCACGCGTGAACATAC
AGAAGGCTGCCACTAAGTACTAAGGAAACCAAACCATAGATACGTTTGTCCTCTAACTCCAAACTATGGTTTATTATTTTTGATAC
ATGACTAAACAAGCAGAATGTGAGAGACCACAACCCATCTTCACATTCTTGGGTCATATAGCAAATCAGCGTGAGCATCCAGGACT
CTGGCTCCTGCTTCTCGACTTATAGCGAGATCTTGAGCTCGACCTTGAGTACGATCGCCTCCTATCCCCCGGTGAAACAGATCTGC
TTGAACGGTGCCTTTCATCATATGGCGAACGTGAGTAGCTCCTTCTGTAGACTGGCGAACGTGAGTAGCTCCTTCTGTAATTTGGC
GAACGTGAATAGCCAGGAGACCGGGAGTAACCATATGGAGATCTTGTAGATGTCCTTCCTCTGAAGTTGACCAATAAAACAATTCT
TTAACTTGATCGTTCTCTCATTTCAGAAGGCTTCTTTCTGTTCTCCTCTGCAAACACCACAGTGATTTCGCGGCCTAGAAGAACAT
AGCCATCCAGATGGTACTTTGCATCTGCAGCATCATCAGGATCATAGTACTGCACAAAGCCAAATCCGCGAGGCTCCCTGCAAGTC
ACCAGCGTCACAAATTGAGCCTACAATTATCAAAACAAGTAACTCTCTTCTAAGTTTTGAACAAAATTGGCAATAGAGAACTTCAG
CATGAATCATGAAACACACAAAAAAAACTTGAATAGATCAAGCACAAACAATCAGCTAGCTTCTAACCTTTTCGAAGCCACTGTAC
TAACTTCGACTTTGACCAGAACATCTTCAAAATCGAAACAAGAAACCAACTCTGTTATCAACACTACTCTTAACCCACCTCTTGTA
GTCCCAAACAAAGTATTTCCATTACTTCACTTTGGGTCTCATGCACATTAATCTTTCCTACTTCTTCATCTTCATCACTTCCAATA
AGACAAACCAAACTTTTTGATAAACCAACAAGATTGATCATAATTATACTGTCACTTAATACAAAGCTAGGACAGTAAGAGGTAAC
GGAAAAAAATCGCCAATCACTCACCCAGTGTAATAGTTACGAGGTATGTAGATATCCTTGAGACGACCAAACCGCCCAAATGGTCT
ACGGAGATCATCTGGCCGACAGTCGAGCCGGAGATTGCGAACAAGTAGACTGGTTGGGGGATCTCTACTCCGAGCTCCGTAGTGTC
CCACGGGACTTGGGCTTCTGTACCTTCTCCTTGGTGGTGATGGACTGTAACTATAATAGGTCCTCCCCATATTCTCACTCACTCTG
TATGATCCCACAAGAGAAACAAAGTGCTCAATTCGCCTGTGATCGCTCTCTCTCTCTCTCTCTCTCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001173443 Os03g0374575 [Oryza sativa Japonica Group] | 343 | 7e-030 |
| AAP46199 putative splicing factor [Oryza sativa Japonica Group] | 333 | 1e-028 |
| ABF96206 RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] | 328 | 4e-028 |
| XP_002882758 hypothetical protein ARALYDRAFT_897406 [Arabidopsis lyrata subsp. lyrata] | 326 | 7e-028 |
| XP_002465213 hypothetical protein SORBIDRAFT_01g034200 [Sorghum bicolor] | 320 | 3e-027 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O75494 Splicing factor, arginine/serine-rich 13A | 210 | 8e-016 |
| Q9R0U0 Splicing factor, arginine/serine-rich 13A | 210 | 8e-016 |
| Q8WXF0 Splicing factor, arginine/serine-rich 13B | 161 | 4e-010 |
| Q8BTI8 Serine/arginine repetitive matrix protein 2 | 132 | 9e-007 |
| Q08170 Splicing factor, arginine/serine-rich 4 | 127 | 3e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C7J0R1 Os03g0374575 protein | 343 | 5e-030 |
| B8AQ95 Putative uncharacterized protein | 333 | 7e-029 |
| Q7Y171 Putative splicing factor | 333 | 7e-029 |
| Q10KQ7 RNA recognition motif family protein, expressed | 328 | 3e-028 |
| C5WYN3 Putative uncharacterized protein Sb01g034200 | 320 | 2e-027 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 283 | 2e-025 |
| AT1G55310.1 SR33; RNA binding / protein binding | 281 | 4e-025 |
| AT1G55310.2 SR33; RNA binding / protein binding | 277 | 1e-024 |
| AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 207 | 2e-016 |
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 176 | 6e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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