 |
Information for unigene UN34877
| FASTA Sequence |
| Unigene ID: UN34877 | Length: 898 |
SSR | | ACGAAGCAGATAAAGCAAAAAGCGGATCAAGAAGAAGAAGAAGAAGAAGAAGAAGATCGAGACTATCATCAGCCTCAAAGACATTC
CTTCTTTGGTTCCTTCATCTATCCCCAGAATTAGAAACTCCCTCTTCTTCTTTGGTAATCACTTTTTTATTTCATTCAATTCATTT
CCAAAACCTTATGTTCTATTCTTCTTTCGCAGTCACATTTACAGAGTACCTGAAGAAAGGACGCATTTTTTATTTGCTATAAAATT
GATTCTTTTTTAGGGTTCTTCTTCTTATAGTAAATTGTTTTGTGTTATTGTGTTTTTTGTATCAATTTGCTTTGTCAGAAACCAAA
GAGCAATGATGGTGAATTCTTTCTCTAACATTCGGATTGATGATCCTAACATCACACAAGGATTGAATCATCCTCTTCCTAAACCC
CAACAACAAGAAGACCCCAAATCATTATCTAAAGATGAATCTAAGAAAGGGTCAGCCAAGTTGTTGTTACATGGAATATGTACTTC
CAAGCGATGGAAACCTCCTCTTTATGATTGCTGCAATGTCCATGGTCCTTGCCATTTGAGATTGTTTACCTACAAAGTTGTGGTTG
AGATTAGAGATTCTTCAGGAACAACAACTGTTTTGGAATGTTTTGGTGATCCTAAACGCAATAAGAAAGCTGCCGCTGAGCATGCA
GCTGAAGGCGCGCTCTGGTATCTTAACCATGTCAAAGGCAAATCAGACAAAGCTGCATCAGTAAATAAGACATCACCTATTCAGAT
GAAATAACCGGAGAGAGTTTGTATACCGTGTTCTAGCGAGGGAGTCTCGTACATTTGCTCATCTGTTATTAGACTTCTTGTTTGTT
TGTCCTCAAACCTTATCATAATTTACTTATTACATGGC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889280 hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp. lyrata] | 446 | 4e-042 |
| NP_178180 RNAse THREE-like protein 1 [Arabidopsis thaliana] | 426 | 8e-040 |
| XP_002527323 double-stranded RNA binding protein, putative [Ricinus communis] | 279 | 9e-023 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P84634 Dicer-like protein 4 | 229 | 3e-018 |
| A7LFZ6 Endoribonuclease Dicer homolog 4 | 220 | 3e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M8N2 At1g80650 | 426 | 6e-040 |
| B9SMV4 Double-stranded RNA binding protein, putative | 279 | 6e-023 |
| B9SC13 Ribonuclease III, putative | 275 | 2e-022 |
| B9H0B4 Predicted protein | 251 | 1e-019 |
| B9HAP9 Dicer-like protein | 237 | 5e-018 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G80650.1 RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding | 426 | 3e-042 |
| AT4G00420.2 double-stranded RNA-binding domain (DsRBD)-containing protein | 236 | 4e-020 |
| AT4G00420.3 double-stranded RNA-binding domain (DsRBD)-containing protein | 236 | 4e-020 |
| AT4G00420.1 double-stranded RNA-binding domain (DsRBD)-containing protein | 235 | 5e-020 |
| AT5G20320.1 DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III | 229 | 2e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
