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Information for unigene UN34877
FASTA Sequence |
Unigene ID: UN34877 | Length: 898 |
SSR | | ACGAAGCAGATAAAGCAAAAAGCGGATCAAGAAGAAGAAGAAGAAGAAGAAGAAGATCGAGACTATCATCAGCCTCAAAGACATTC
CTTCTTTGGTTCCTTCATCTATCCCCAGAATTAGAAACTCCCTCTTCTTCTTTGGTAATCACTTTTTTATTTCATTCAATTCATTT
CCAAAACCTTATGTTCTATTCTTCTTTCGCAGTCACATTTACAGAGTACCTGAAGAAAGGACGCATTTTTTATTTGCTATAAAATT
GATTCTTTTTTAGGGTTCTTCTTCTTATAGTAAATTGTTTTGTGTTATTGTGTTTTTTGTATCAATTTGCTTTGTCAGAAACCAAA
GAGCAATGATGGTGAATTCTTTCTCTAACATTCGGATTGATGATCCTAACATCACACAAGGATTGAATCATCCTCTTCCTAAACCC
CAACAACAAGAAGACCCCAAATCATTATCTAAAGATGAATCTAAGAAAGGGTCAGCCAAGTTGTTGTTACATGGAATATGTACTTC
CAAGCGATGGAAACCTCCTCTTTATGATTGCTGCAATGTCCATGGTCCTTGCCATTTGAGATTGTTTACCTACAAAGTTGTGGTTG
AGATTAGAGATTCTTCAGGAACAACAACTGTTTTGGAATGTTTTGGTGATCCTAAACGCAATAAGAAAGCTGCCGCTGAGCATGCA
GCTGAAGGCGCGCTCTGGTATCTTAACCATGTCAAAGGCAAATCAGACAAAGCTGCATCAGTAAATAAGACATCACCTATTCAGAT
GAAATAACCGGAGAGAGTTTGTATACCGTGTTCTAGCGAGGGAGTCTCGTACATTTGCTCATCTGTTATTAGACTTCTTGTTTGTT
TGTCCTCAAACCTTATCATAATTTACTTATTACATGGC
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GenBank top hits (Blast detail) | Score | e value |
XP_002889280 hypothetical protein ARALYDRAFT_316895 [Arabidopsis lyrata subsp. lyrata] | 446 | 4e-042 |
NP_178180 RNAse THREE-like protein 1 [Arabidopsis thaliana] | 426 | 8e-040 |
XP_002527323 double-stranded RNA binding protein, putative [Ricinus communis] | 279 | 9e-023 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P84634 Dicer-like protein 4 | 229 | 3e-018 |
A7LFZ6 Endoribonuclease Dicer homolog 4 | 220 | 3e-017 |
TrEMBL top hits (Blast detail) | Score | e value |
Q9M8N2 At1g80650 | 426 | 6e-040 |
B9SMV4 Double-stranded RNA binding protein, putative | 279 | 6e-023 |
B9SC13 Ribonuclease III, putative | 275 | 2e-022 |
B9H0B4 Predicted protein | 251 | 1e-019 |
B9HAP9 Dicer-like protein | 237 | 5e-018 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT1G80650.1 RTL1 (RNase three-like protein 1); RNA binding / double-stranded RNA binding | 426 | 3e-042 |
AT4G00420.2 double-stranded RNA-binding domain (DsRBD)-containing protein | 236 | 4e-020 |
AT4G00420.3 double-stranded RNA-binding domain (DsRBD)-containing protein | 236 | 4e-020 |
AT4G00420.1 double-stranded RNA-binding domain (DsRBD)-containing protein | 235 | 5e-020 |
AT5G20320.1 DCL4 (DICER-LIKE 4); RNA binding / protein binding / ribonuclease III | 229 | 2e-019 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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