Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN34887

FASTA Sequence
Unigene ID: UN34887Length: 663 SSR 
CAACGGAAACAAACCACCCGTCATATAGAGAGAGGGATTCAACATCTTCACTGATTCTTTCTTCATTTTTTACACACACAAAACAG
ACAAGAAACTGCAGTTCAAACAAATCCCTAAAGCCCCCCTATATTATATAAAACTACAAAACATAAAACCTCTTAGTTAGGACTGG
TCTCTGTTCTGTCCTCTGGGCCAGCAAGCGTCACATTGCAATCACAAGCGAATCTGCGCGCAAGCATGATGGCAGCGTTTCTCTCT
CTCTCAGATTCAAAAGCTACCACAAAGGACACTCCTTTCTTTGCCTGCCAATACACTGCCTGAGCTGCCGCGTTCCCACCTCCTCT
CACTCCACATAGCTGCATTGCACTAGAGTAATACTCTTTTGCAATCACCGTCTTTCCCTTGCAAAGTTTAATCCTCATTTTACCAA
CGTGAAACAAGTGGATAGATTCTGATGTATGGTCTTCCCCACTCATCTGAGTCACTACTACATTGAAATCAACATCGTGTTTTCGT
ACTAATGCCTCCACATAGCTACCCAGTCCAGCAGCTGGATCGATCTTTCCCACGGTGGATAATGAGAGCGTGTGGCCATTGTAAAC
GATATCAGCATGCAAGGCTCGTCCAACGTCAAAAGGCTCGGGAGCGTAAACTGATTTCGTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_180245 plectin-related protein [Arabidopsis thaliana]8315e-087
XP_002880833 hypothetical protein ARALYDRAFT_481549 [Arabidopsis lyrata subsp. lyrata]8154e-085
XP_002269709 PREDICTED: similar to plectin-related [Vitis vinifera]6891e-070
CBI24323 unnamed protein product [Vitis vinifera]6891e-070
XP_002299966 predicted protein [Populus trichocarpa]6659e-068

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O48791 Putative uncharacterized protein At2g267708313e-087
B9GFS8 Predicted protein6656e-068
B9SB74 Transcription factor, putative6612e-067
C6TC02 Putative uncharacterized protein6602e-067
B9HNJ6 Predicted protein6584e-067

Arabidopsis top hits (Blast detail)Scoree value
AT2G26770.1 plectin-related8312e-089
AT2G26770.2 plectin-related8312e-089
AT2G40820.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 2697 Blast hits to 2260 proteins in 261 species: Archae - 3; Bacteria - 96; Metazoa - 995; Fungi - 432; Plants - 786; Viruses - 39; Other Eukaryotes - 346 (source: NCBI BLink).4908e-050
AT3G56480.1 myosin heavy chain-related4584e-046

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information