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Information for unigene UN35242

FASTA Sequence
Unigene ID: UN35242Length: 953 SSR 
GAGGTAAACGATGTGCCTTTCAAGGAAACGATCCTTGCTCCAAGAGTGTTCATGGAGGTACTAATTTCTGTGTGGCTCATGGCGGT
GGAAAGAGATGTGCGGTTCCTGAATGCACTAAGAGCGCTAGAGGGAGGACTGACTTCTGTGTCAGACACGGTGGAGGGAAGAGGTG
CATGTCTGAAGGATGCGGGAAAAGCGCGCAAGGCAGTACTGACTTTTGCAAGGCGCATGGAGGAGGGAAGCGTTGTGCGTGGGGTC
ATCCCGAGACTGAGTACGCGGGTCAATCTTCTTCTGGTCCTTGTAGTTCGTTTGCTAGAGGTAAGACTGGTCTCTGTGCGCTTCAT
AACAGTCTGGTTGAGGATAACCGGGTTCACGGAGGAATGACTGTAACTTCGGAGAGCCAAGAACCGAGACGAAGCAGCAGCGAGAC
AGAGAACGAGGAAGAGTTTAGTGGCTCTCAAGACGTGATGAACATGGATAGGATGAAAGGGAGAAGCGCTGTTGGGTCTCCAGAGA
CTGATATTGATCTCAATGAGAATGAAAGAGGATTGGGGTTGGCTCCAGAAGGAAGAGTCCATGGTGGAAGTTTGATAATGGCCATG
TTGGCTGGTAGAGAGGGTGGCTCTGGCTCAGGTTCTGGTTCAAGAAACCTGCCTAAGGGGTGGATGTAAGTTAATATTGTCTTCAG
TTTGCTTCCGGTCTTAATTCTGCACGTGTGGAGTAGTATGTTGGCACGTGATAGTGAAGGTGTTACGAGTCTTGTGTTTGTTCTTG
TTTAGGTTTGTGCTTAGAGACTACAAAAGGGATCAAAGTCTCTATTCTCTGTCTTATTTGCCTGTAGATATTGAATTTATGGGTTC
ACGCAAGGTTATTGTGAATTGTCAAAACAGTCTGTCTTATGATGACGATGATGATGATGATGATGATGAGAATAAAGTCATGTCTT
TGTTTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_176596 uncharacterized protein [Arabidopsis thaliana]10479e-112
BAD43515 hypothetical protein [Arabidopsis thaliana]10442e-111
XP_002886362 hypothetical protein ARALYDRAFT_474940 [Arabidopsis lyrata subsp. lyrata]10406e-111
XP_002509888 transcription factor, putative [Ricinus communis]6454e-065
XP_002297999 predicted protein [Populus trichocarpa]6411e-064

Swiss-Prot top hits (Blast detail)Scoree value
Q9SZ67 Probable WRKY transcription factor 193091e-027

TrEMBL top hits (Blast detail)Scoree value
Q9SH64 F22C12.1010476e-112
Q680W5 Putative uncharacterized protein At1g6414010441e-111
B9RCK4 Transcription factor, putative6453e-065
B9GKB3 Predicted protein (Fragment)6417e-065
A9PJL2 Putative uncharacterized protein6354e-064

Arabidopsis top hits (Blast detail)Scoree value
AT1G64140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 2298 Blast hits to 1429 proteins in 121 species: Archae - 0; Bacteria - 42; Metazoa - 1626; Fungi - 29; Plants - 243; Viruses - 9; Other Eukaryotes - 349 (source: NCBI BLink).10474e-114
AT5G64550.1 loricrin-related4103e-040
AT5G09670.2 loricrin-related4041e-039
AT5G09670.1 loricrin-related4041e-039
AT4G12020.1 WRKY19; transcription factor3091e-028

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

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