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Information for unigene UN35454

FASTA Sequence
Unigene ID: UN35454Length: 1056 SSR 
GATACACACACACACACACATTCACACACCATCTTCAACCTCTCTCTTAATCTCAAAAATGGACTTTTTCCAGAAAGCCAAAGCCG
TCCGTTTACGTAGCCACCACGACAAGTTCCTAATCGCCGACGAAGACGAAGAGTCCGTCACCCAAGAACGCAACGGCTCAGCAGGC
GCAGCCAAGTGGACCATCGAGCCGGTCCCGGGCTCATCCAACCTCATCCGCCTGAAAAGCGCTTACGGCAAATACTTGACGGGGTC
GAACAAACCGTTCCTCCTCGGAGCCACCGGAAGAAAAGTCCTCCAGACCAATCCTAGCCGCCTCGACTCGTCTCTCGCTTGGGAGC
CGATCAGAGACGGCGCTCTTGTCAAGCTCAAGACACGTTACGGCCACTTCCTTCGCGGTAATGGTGGTTTGCCTCCGTGGAGAAAC
TCCGTCACTCACGATATTCCTCACAGATCGGCCACTCAGGATTGGGTTCTTTGGCACGTCGATGTCGTCGAGATTCTCTCCGATCA
ACACAAGCAGCAGCAGCCTCCGTCTCCTCTTCATCATTCTGATTCCTAGATTTCGAACCTGGATCTCCTTCTAGATCTAACCGGTT
TTTCAGACAAGAGTCAACGGATTCAGTAGCGGTGGGATCGCCGCCGAAGTCGGAAGGGATAGTGATTTATTACCACGTGGCGGACG
ATGAGGGTGAAGAGGAAGATGATTCCGTTGAGGCGAAGTCGTTTACTTTCAAAGGCAATGGCGTTGAGGAGCTGACTAAGAGGTTG
AAAGAAGAGAGCAATGTGGAAGATGTTATCGTTTGTACTCGTAGTCCTTTGAACGGCAAGCTTTTCCCTTTGCGTCTTCAGCTCCC
GCCCAATAATGCCGACATGACTGTTGTTTTAGTACCAACCTCGTCCAAAACAGAAGGGTTCATCAAGTGAGAGATGTTTATGTTTG
AAGCTTGAGCCGTGAAAGTGAAGGCTATAGCTGGAAAATGATTTGTTGTTAATTCAGTGGATTTGCCTTAGAGATATGCTGTTTGA
TTATTAAACATTATGAATTATACG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002888189 hypothetical protein ARALYDRAFT_893597 [Arabidopsis lyrata subsp. lyrata]7593e-078
AAF79761 T30E16.31 [Arabidopsis thaliana]7413e-076
NP_564751 uncharacterized protein [Arabidopsis thaliana]7413e-076
XP_002520162 conserved hypothetical protein [Ricinus communis]6437e-065
XP_002311797 predicted protein [Populus trichocarpa]6411e-064

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LQ43 T30E16.317412e-076
Q9XIF7 At1g59710/T30E16_317412e-076
B9S2E3 Putative uncharacterized protein6435e-065
B9HLW9 Predicted protein6419e-065
B9HMU6 Predicted protein6256e-063

Arabidopsis top hits (Blast detail)Scoree value
AT1G59710.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27100.1); Has 119 Blast hits to 107 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).7411e-078
AT1G27100.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69900.1); Has 184 Blast hits to 118 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 8; Plants - 166; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).5823e-060
AT3G28630.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G59710.1); Has 121 Blast hits to 110 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5421e-055
AT3G28630.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G59710.1); Has 120 Blast hits to 109 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5421e-055
AT1G69890.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27100.1); Has 121 Blast hits to 109 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5322e-054

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information