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Information for unigene UN35489
| FASTA Sequence |
| Unigene ID: UN35489 | Length: 1054 |
SSR | | GAGTCCGAGTTCTCAAATCTTATCTTGATTCTTCTCGGATCACGATGCAGCACCCACCACCACCCGGAGGTCTCCTTCCCCACCAC
GTTCCTCCTCCGTCTGCTCAACAGCACTACGGTTACCAGCAACCGCCTCCTTACGCTGCTCCTCCACCACAGATGTGGAATCCACA
GGCGCCGCCACCAAGCCAGCCTATGACCGCCGACGAGATCCGTACTCTCTGGATCGGTGACTTACAGTTCTGGATGGATGAGAGTT
TCCTCTACAGTTGTTTTGCTCACACCGGAGAGGTTCTTTCTGTTAAAGTCATCCGTAACAAGCAGACATCTCAGGTTGAATGCTAC
GGTTTCATCGAGTTTGTATCTCACGCTGCTGCAGAACGAGCTCTACAAACATACAACAGCACTCCCGTCCCTGGCCTTCCTGACCA
GCTCTTTAGATTGAACTGGGCCTCGTTGGGCTCTGGAGATAAACGTGACGATTCGCCTGATTACACCATCTTCGTTGGTGATCTGG
CCGCTGATGTTACGGACTATGTCTTGCTAGAGACGTTCAAAGCCTCTCATCCTTCGGTTAAGGATGCAAAGGTTGTTATCGATAGA
GCCACTGGGCGTACAAAGGGATATGGTTTCGTCAGGCTATCATGGGGACGAAGTCCTTCATCTAAACAGGCGGCCGATCCGAGTCA
GTATTATTACGGTGGGTATGGACAAGGTCAGGAGCATTATGGGTACTCCATGCCGCAAGATCCTAACGCATATTACGGAGGCTACC
CTGGTGGGTATCAGCAGCCACCACAGGTGGGGCAGCAACCACCTCAGCAGCCACCACAGCAGCAACAAGTCGGGTTCAGCTACTAG
CTGGCGAGAGTGTTCTTAGCTCCACTGTTTGTTGTTTGTCTACTTTGTCATTAAACAGACACAGTTGATCTGTCTCTCTTTGTCTC
CTCTCTCTCTCTCTCTCTTTAGGAGAGTTTCTTTTCCTCAGCACTGATAATACTAAAGGAGTGTGAAGAGATTTGACTCTTAATAA
TGCTTTGTGATGCTTCTGTTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889883 ATRBP45B [Arabidopsis lyrata subsp. lyrata] | 907 | 2e-095 |
| NP_172630 RNA recognition motif-containing protein [Arabidopsis thaliana] | 882 | 1e-092 |
| NP_849641 RNA recognition motif-containing protein [Arabidopsis thaliana] | 882 | 1e-092 |
| BAH56983 AT1G11650 [Arabidopsis thaliana] | 882 | 1e-092 |
| AAM64532 putative DNA binding protein [Arabidopsis thaliana] | 866 | 1e-090 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q1RMJ7 tRNA selenocysteine 1-associated protein 1 | 309 | 2e-027 |
| Q9NX07 tRNA selenocysteine 1-associated protein 1 | 309 | 2e-027 |
| Q9QZI7 tRNA selenocysteine 1-associated protein 1 | 309 | 2e-027 |
| Q80VC6 tRNA selenocysteine 1-associated protein 1 | 307 | 3e-027 |
| Q5R462 tRNA selenocysteine 1-associated protein 1 | 305 | 5e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0Z2Q4 AT1G11650 protein | 882 | 1e-092 |
| Q3EDE3 Putative uncharacterized protein At1g11650.1 | 882 | 1e-092 |
| Q9SAB3 At1g11650 | 882 | 1e-092 |
| Q8LBV8 Putative DNA binding protein | 866 | 7e-091 |
| B9RXN0 Nuclear acid binding protein, putative | 652 | 5e-066 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G11650.2 RNA-binding protein 45 (RBP45), putative | 882 | 5e-095 |
| AT1G11650.1 RNA-binding protein 45 (RBP45), putative | 882 | 5e-095 |
| AT5G19350.1 RNA-binding protein 45 (RBP45), putative | 540 | 2e-055 |
| AT5G19350.2 RNA-binding protein 45 (RBP45), putative | 540 | 2e-055 |
| AT4G27000.1 ATRBP45C; RNA binding | 497 | 2e-050 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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