 |
Information for unigene UN35878
| FASTA Sequence |
| Unigene ID: UN35878 | Length: 761 |
SSR | | GGATCTCCCGATCATCATCGGAACAAGATGCAGAAGCTGAACGAGTTCTTGTCTGGCGAACAGACAAACGATAGCTTCCTTGAAGA
TGGATCGGAGGGTCTCTGTTCTCTCTCCACAACTCAGAGAATGTACGGATTCGCCGCGTCTTTGGCCGCTGGTTTGCTTCTCATGT
TTCTGTCCATGATCGTGTTTGCAATCCCCATCAAGTTTGCACTGCTCTTCACATTCGGAAATGTTCTCGCTATTGGAAGCACAGCC
TTCCTCATGGGACCTGAGCAACAGATAAACATGATGTTGGACCCTGTTCGTTTTTACGCTACCTCTATCTATGGTGGATGCGTCCT
CCTTGCTCTCTTTTGCGCTCTCTTGATCCACAGCAAAATTTTGACAGTGATTGCGATTCTATGCGAGACTTGTGCACTTATTTGGT
ACAGCCTCAGTTATATCCCGTTTGCACGAAGAATGGTCTCTGAAATCATGATCCGTCTTTGCGACACCGAGCTATAAGTCAATCTG
AATGGTTTTAGATATGATTCTTCTTTTTCAACACTTCTTGATTTTTTTTTTTGTTTGTTTGACCTGATCCGGTGGTTTGCGCATGA
ATCACAAGCAATGCAAATTGAGTTTCTTTTGTTGCTATCTTGAAGCTCTTGTGTGTGTATGTGTGTGTGTGTGTATTTTTTGTTGC
TTCAAGCCCTTTCTCAGCTTCTGACTTAACAGTCGTTTGATATTGGGAAATGTAAAAACTTGAGTTATGAGCG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874175 hypothetical protein ARALYDRAFT_489277 [Arabidopsis lyrata subsp. lyrata] | 712 | 4e-073 |
| NP_197805 Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana] | 698 | 2e-071 |
| XP_002318402 predicted protein [Populus trichocarpa] | 603 | 2e-060 |
| XP_002321435 predicted protein [Populus trichocarpa] | 595 | 2e-059 |
| ACJ84171 unknown [Medicago truncatula] | 584 | 3e-058 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O95562 Vesicle transport protein SFT2B | 271 | 3e-023 |
| Q8VD57 Vesicle transport protein SFT2B | 258 | 9e-022 |
| Q4FZV2 Vesicle transport protein SFT2B | 239 | 1e-019 |
| Q8WV19 Vesicle transport protein SFT2A | 220 | 2e-017 |
| Q5SSN7 Vesicle transport protein SFT2A | 215 | 8e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6GKX4 At5g24170 | 698 | 1e-071 |
| B9I596 Predicted protein | 603 | 1e-060 |
| B9IDV3 Predicted protein | 595 | 1e-059 |
| B7FHE2 Putative uncharacterized protein | 584 | 2e-058 |
| Q9FIP2 Genomic DNA, chromosome 5, TAC clone:K12G2 | 572 | 5e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G24170.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). | 699 | 6e-074 |
| AT5G23550.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | 433 | 4e-043 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
