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Information for unigene UN35892
| FASTA Sequence |
| Unigene ID: UN35892 | Length: 1106 |
SSR | | TTTTTTCCTCTTTCCTGTTCTCTCTATATATCTTCCTCCGCCTGTTGTTAAAAAAAAAAAAATATCTTCCTCCGCCGCCGAAAGAG
AATCGTCTATCGGAAAAACTCTCAAGATGTCGACTGGATTAGATATGTCTCTCGACGACATGATCGCTAAAAACCGCAAGTCCCGC
GGATCCGGTCCCCCCGTGGATCTGGATCCGGATCCGGTCCAATCCGCCGCAACAACCCTAATCGGAAATCAAACCGATCTGCTCCA
TACCAATCGGCCGCCAAGGCGCCGGAGTCCACCTGGGAACACGACATGTACTCCTCCGAAGGCTTCCCTTCCCGATCTACCCGTTC
TTCCGCCGGAATCGAAACCGGAACGAAGCTCTACATATCCAATTTGGACTACGGTGTCATGAACGACGACATCAAGGAACTGTTTG
CTGAAGTAGGGGAGCTTAAACGTTACACTGTTCACTTTGACAGGAGTGGAAGATCAAAGGGAACTGCTGAAGTTGTATACTCTCGG
CGTGGTGATGCAATCGCTGCTGTGAAGAAGTACAACGACGTTCAGCTCGACGGAAAGCCCATGAAGATTGAGATTGTGGGCAACAA
TCTTCAAGCCGCTTCTGCTCCTTCTGGTAGACACGGCGGGAATGCAAACTTCGGTGGCGCTTCTTCAAGGCGTGGAGGACAAGGGA
GAGGTGGTCAACAACGTCGTGGTGGTGGTGGTGGTCAAGGAGGCCGTGGTGGTGGTCGTGGCAGACGCTCTGGCAAGGGCCCGGCA
GAGAAGGTATCTGCTGAAGATCTTGATGCGGATCTTGATAAGTACCACGCAGGAGATATGGAGACAAACTGAGGAACGTGGCTCGT
ATCTTCTCGAAACCACCGCAAGTGTGTGAGCGAAGAAGAGGAGAAGCTAGAAAACTTTGTCCAGAGGCTTTGCTATATATCCTCTT
CTTGGCCGTATGTTGTTTGATTTGTTTCATTAGAATGACCCTTATGAGATTGTTGTTTAATCTTAATGCCCTCGAGTACAAGGCAG
AGGAACGAAAACGAGTTTTATATGCACACAGAAGTGCTTTCACAAGCTAGGTTATGACAATGATGATTTAGCTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001190572 RNA recognition motif-containing protein [Arabidopsis thaliana] | 913 | 4e-096 |
| NP_851229 RNA recognition motif-containing protein [Arabidopsis thaliana] | 897 | 3e-094 |
| NP_974965 RNA recognition motif-containing protein [Arabidopsis thaliana] | 886 | 5e-093 |
| AAM63758 transcriptional coactivator-like protein [Arabidopsis thaliana] | 872 | 2e-091 |
| XP_002864660 hypothetical protein ARALYDRAFT_496130 [Arabidopsis lyrata subsp. lyrata] | 869 | 5e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q28FB9 THO complex subunit 4 | 436 | 3e-042 |
| Q86V81 THO complex subunit 4 | 433 | 8e-042 |
| B5FXN8 THO complex subunit 4 | 430 | 2e-041 |
| Q3T0I4 THO complex subunit 4 | 429 | 2e-041 |
| O08583 THO complex subunit 4 | 417 | 5e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L773 Transcriptional coactivator-like protein | 897 | 2e-094 |
| Q3E888 Putative uncharacterized protein At5g59950.3 | 886 | 4e-093 |
| Q8LCA6 Transcriptional coactivator-like protein | 872 | 2e-091 |
| Q9FJE1 RNA and export factor binding protein 2-I-like protein | 865 | 1e-090 |
| Q3E889 Putative uncharacterized protein At5g59950.2 | 730 | 4e-075 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G59950.1 RNA and export factor-binding protein, putative | 909 | 4e-098 |
| AT5G59950.3 RNA and export factor-binding protein, putative | 898 | 8e-097 |
| AT5G59950.2 RNA and export factor-binding protein, putative | 742 | 1e-078 |
| AT5G59950.4 RNA and export factor-binding protein, putative | 663 | 1e-069 |
| AT5G02530.1 RNA and export factor-binding protein, putative | 386 | 2e-037 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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