Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN35954

FASTA Sequence
Unigene ID: UN35954Length: 884 SSR 
TCATTTAGAAAAAAATATACTCAAAATCATATAAGTGATGCGCACATTACAACATACCATTAGGAATATCCCTGAGCAGTGTTCCA
CGACCCTGAGATTTATTAACATATAAAAACCATAATTAACTAATTGAAGAGAACATTATACCAAAAAAATAATAAAAAATTACCTT
TTCGATAGAAAGGGACTTGGTTGGTGTAGGACGCAGGGGAGTAGAGAGGGAGAAAAGCTCCGCCTTCTTTCTCTCCCTCGTTGGTC
TATCACTATTCCTCTGAGTCTCAACAGACTTCTTACTTACACTTCCTTCTTCCTCTTTCTCTTCCAACTGGTCCTCCTCCTTCTCC
GCCTCGTCTTTGCTGGCGAAATTCACTTCTTTCGGGGAGGAGGATTCGACTCCCAGTGTTTTTCCTTCTACGGTTTCCATCGCCAT
CTGAGGTTTTTCTTTTTTGGATGTTTTTCGCGAGATACTCAAAAACCCTAAATCAGGAAATTGAGCTAACGATTAAGACGACGAAA
CAGAGAACTAATAAGTTCGGGGTGGTTTTTCAACAAATTTGGCGCCAAATATTGGAACATAAAGGCGGGCTCTCTCTCTCTCTCTG
GTCGACAAAAGCAACTCGCGCCAAAACTACTTACTATAATACACCTAACTCGGCCCAGTAATATAATAAGCCGAATCCCATCTCCT
AACGGGCCTCTTTAACATTCCCATTGTGAAAACAATTCTTCTTTTTTTAGCAAATACCGTTTACGGTTTACCCAACAAATTTGCAT
AGTACCACCTTTTGAGCAAATAGCAAGTAGATTAGGCGCGTATTTGTTCTCTAGGTTCTTAGAGCATATCACAAACTTGAATTTTA
ATACGAGTTGAATCGGCGGCTGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864854 hypothetical protein ARALYDRAFT_332577 [Arabidopsis lyrata subsp. lyrata]1982e-013
NP_201160 DEK domain-containing chromatin associated protein [Arabidopsis thaliana]1938e-013
NP_001154794 DEK domain-containing chromatin associated protein [Arabidopsis thaliana]1938e-013

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q84JB7 Putative uncharacterized protein At5g635501936e-013
Q9FFQ8 Emb|CAB62360.11936e-013

Arabidopsis top hits (Blast detail)Scoree value
AT5G63550.1 EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48710.1); Has 115795 Blast hits to 50006 proteins in 1760 species: Archae - 230; Bacteria - 10317; Metazoa - 57515; Fungi - 12631; Plants - 4292; Viruses - 1075; Other Eukaryotes - 29735 (source: NCBI BLink).1933e-015
AT5G63550.2 EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48710.1).1933e-015
AT3G48710.1 EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63550.2); Has 48226 Blast hits to 25734 proteins in 1103 species: Archae - 54; Bacteria - 6881; Metazoa - 21026; Fungi - 4604; Plants - 1514; Viruses - 306; Other Eukaryotes - 13841 (source: NCBI BLink).1145e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information