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Information for unigene UN36016
| FASTA Sequence |
| Unigene ID: UN36016 | Length: 1199 |
SSR | | GGATACGAGCATTCTCTCTCTCTCTCTCGTCCTGATTTGTATAAACCCTAACGACTACTAGATTTACGGCTCCTTTAATCGGAGAA
ATTGTATCATGAGTCGTTACGATAGCCGGACCGGTGACTCCACCTCCTACCGTGACCGTCGAAGTGACTCAGGGTTTGGTGGAGCT
TCAGCGTACGGAAGCTCAGCTAGTAGTAAAAGGGAGACTAGTGTTGGTGGGGATGAGTCTCCAAAGAAGCAGCCAGATTTGGATGG
TTTGACTCCTTTTGAGAAGAATTTCTATGTTGAGTCTCCCTCTGTCGCAGCTATGACGGAGGCTGAAGTGGAGGAGTATCGAAGGA
TGAGGGAGATCACTGTTGAGGGTCGTGATATTCCTAAACCTGTCAAAAGCTTTCGTGATGTTGGCTTTCCTGATTATGTTTTGGAA
GAGGTTAAGAAGGCTGGTTTTACTGAACCTACCCCCATACAATCTCAGGGGTGGCCAATGGCGTTGAAGGGACGTGATCTCATTGG
CATTGCTGAAACTGGCTCTGGGAAGACTCTTTCTTACTTGCTACCTGCCATAGTCCATGTGAATGCTCAACCAATTTTAGCTCCTG
GGGATGGTCCAATCGTCTTGGTTCTTGCTCCGAGAGAGATTGGGTACTCTCGGAGTTTCGATCAGGCAAAAGCCCTATAATGACTG
CTACAGACGTCGCAGCTCGTGGATTAGATGTTAAGGATGTGAAGTATGTGATAAACTATGACTTCCCTGGATCACTGGAGGATTAT
GTTCACAGGATTGGTCGAACTGGTAGAGCCGGGGCCAAAGGAACAGCTTACAGTTTCTTCACAGCTGCAAATGCGAGGTTCGCCAA
AGAGCTTATCAGCATACTAGAAGAAGCTGGACAGAAAGTGAGCCACGAATTAGCATCAATGGGTCGCAGCACAGCTCCTCCTCCTC
CAGGGCTTGGAGGATTTAGAGACCGTGGAAGCAGAAGAGCTTGAGTTGATATCTGTTTTATGTGTATGTGTTATTGGCTTTTAGGG
CTCAGTGGTTTTCTTCTTCTTCTTCTTTCCATTTACTCTTTTATTTGATGCCTCACTCTCTTTCCTAAAACATTTGACATTGGCAT
CAAAACGTTAAACATGTAAGATAACATTTGATCCGATGGTATGATTTGGTTTTAAGTACAAAACCAAAGATGTCGTAATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002891814 hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp. lyrata] | 806 | 1e-083 |
| NP_175911 DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana] | 797 | 1e-082 |
| XP_002527412 dead box ATP-dependent RNA helicase, putative [Ricinus communis] | 766 | 5e-079 |
| XP_002279117 PREDICTED: hypothetical protein [Vitis vinifera] | 747 | 8e-077 |
| AAD46404 ethylene-responsive RNA helicase [Solanum lycopersicum] | 727 | 2e-074 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C718 DEAD-box ATP-dependent RNA helicase 20 | 797 | 5e-084 |
| Q5QMN3 DEAD-box ATP-dependent RNA helicase 20 | 636 | 2e-065 |
| Q8W4R3 DEAD-box ATP-dependent RNA helicase 30 | 518 | 1e-051 |
| Q4X195 ATP-dependent RNA helicase dbp2 | 515 | 3e-051 |
| Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 | 515 | 3e-051 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SN43 Dead box ATP-dependent RNA helicase, putative | 766 | 3e-079 |
| Q9SWV9 Ethylene-responsive RNA helicase | 727 | 1e-074 |
| B9MWR8 Predicted protein | 668 | 8e-068 |
| A2Q465 Helicase, C-terminal | 665 | 2e-067 |
| B8LKZ7 Putative uncharacterized protein | 665 | 2e-067 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55150.1 DEAD box RNA helicase, putative (RH20) | 797 | 5e-085 |
| AT5G63120.2 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 518 | 1e-052 |
| AT5G63120.1 ethylene-responsive DEAD box RNA helicase, putative (RH30) | 518 | 1e-052 |
| AT1G20920.1 DEAD box RNA helicase, putative | 329 | 9e-031 |
| AT1G20920.2 DEAD box RNA helicase, putative | 329 | 9e-031 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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