Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN36170

FASTA Sequence
Unigene ID: UN36170Length: 698 SSR 
GGGCCGCAGTCCAGTCCAATCGCCGGCGGCAGAAAATGGGGAAGAAGGACAAGAGAAATCACGACGACCCTGAGCTCGAATTGGAG
CCCGAGCTAACTGAAAGAATCGACGACGGAGACCTCAAGAAGAAGACTAAGAAGAAGAAGAGAAGCCATGATGATCCGGAGCAAAA
GGTGAGTCTCGACGGAGACGCGAAGAAGAAGAAGAAAAAGAAGAAGAAAAGCAAGGAGGAGGAGGAGGAGCAAACGATAATCCAAG
AGGAGGAGAAGCCAAATGGTGAAGAAAAGAAAAAGGAAGGAGGCAGACCAACTGTTACTATAGCCATAGCTGGCTCCATCATCAAC
AACACTCAATCCCTCGAGCTCGCCACGCGTCTTGCTGGCCAAATAGCTCGTGCTTCCACTATTTTTCGAATCGACGAGATTGTAGT
GTTCGACAATAAGAGCAGCTCAGAGATCAATAACTCTGATAGCAACAACGAAAGTGGCGCCCCCTTTCTCGTTCGTATCTTGAAGT
ATCTAGAGACGCCACAGTATTTGAGGAAGACTCTCTTTCCCAAGCACAATGATCTTAGATTTGTGGGTATGTTGCCACCTCTTGAT
GCTCCTCACCATCTCCGTAAGCACGAGTGGGAACAATTCCGTGAAGGTGTGACGCTAAGGGAAAAGCCGTCAAACTCTGAGGGTAC
ATTGGTTGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197431 uncharacterized protein [Arabidopsis thaliana]8056e-084
XP_002871878 hypothetical protein ARALYDRAFT_909964 [Arabidopsis lyrata subsp. lyrata]7796e-081
XP_002436686 hypothetical protein SORBIDRAFT_10g007030 [Sorghum bicolor]5412e-053
CAN75987 hypothetical protein VITISV_012192 [Vitis vinifera]5252e-051
XP_002277845 PREDICTED: hypothetical protein [Vitis vinifera]5198e-051

Swiss-Prot top hits (Blast detail)Scoree value
Q3UHX9 Uncharacterized protein C9orf114 homolog3635e-034
Q5T280 Uncharacterized protein C9orf1143529e-033
Q10950 Uncharacterized protein B0361.61762e-012
P36044 Protein MNN41351e-007
Q54T81 Probable H/ACA ribonucleoprotein complex subunit 41207e-006

TrEMBL top hits (Blast detail)Scoree value
Q6NLH7 At5g193008054e-084
C5Z6G0 Putative uncharacterized protein Sb10g0070305412e-053
A5ASC7 Putative uncharacterized protein5251e-051
B6TIL9 Conserved protein5196e-051
C6TDB0 Putative uncharacterized protein5106e-050

Arabidopsis top hits (Blast detail)Scoree value
AT5G19300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 4766 Blast hits to 2044 proteins in 217 species: Archae - 72; Bacteria - 102; Metazoa - 2264; Fungi - 372; Plants - 195; Viruses - 4; Other Eukaryotes - 1757 (source: NCBI BLink).8053e-086
AT3G57150.1 NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase1377e-009
AT5G41020.1 myb family transcription factor1143e-006
AT3G28770.1 unknown protein1118e-006
AT5G27120.1 SAR DNA-binding protein, putative1118e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information