RadishBase

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Information for unigene UN36417

FASTA Sequence

Unigene ID: UN36417	Length: 1275	SSR
GGCTGGAGTAACTTGACTTTTCTGAATCTTCGGAAGAACAATTTGGAAGGCAGTATTCCTGATGTGTTTTCTATGGGTGCTTCTCT ACAGACACTTGATGTTGGACACAACCAACTAACCGGGAAACTTCCAAGATCTCTTCAGAATTGCTCATCTCTAGAGTTTCTAGTTG TTGACCACAACATGATTGAAGACACATTTCCTTTCTGGTTCAAGGCTTTTCCAAATTTGCAAGTGCTTATCCTCAGATCAAACAAG TTTTATGGCTCTATCTCTCCTCCCGATCAAGGTCCTCTCGGGTTTCCAGAGCTACGAATATTTGAGATATCTGATAATAATTTTAC TGGAAGCTTGCCACCAACATACTTTGAGAACTGGAAAGCATCATCACTTACAATGAATGAAGATGGTGGTCTATATATGGTACACA GTAATAGTAAAACCGGGAAGGTATTACCCTATATCATTATTGACGCTATAGATTTGCGGTACAAAGGTCTATCCATGGAGCAAAAG AGGGTCCTTACTTCCTACGCCACCGTTGATTTCTCTGGAAGCCAACTTGAAAGACAGATTCCTGAATCAATTGGCCTCTTGAAAGC ATTGATTGCACTCAACTTCTCAAACAACGCCTTCACAGGTCATATTCCTCTGTCTCTAGCCAATCTTAAGAAGCTCGAGTCACTAG ACCTATCAAGCAACAACCTCTCAGGGACCACTCCAAGTGGACTTGGGACCCTCTCCTTTCTGGCGTACATTAACGTGTCTCACAAC CAACTCAAGGGTGAAATACCACAAGGAACACAGATTATTGGCCAACCTAAGTCTTCATTTGAAGGGAATGCAGGGCTTTGTGGTCT TCCTCTCCAGGAAACTTGCTTTGGGCCTAATTTGCCACCTGCACAACAACCTAAGAAATATGACGATGAAGAAGAAGAAGAAGAAG TGTTGAACTGGAAAGGTGTGGCAGCAGGGTATGGACCTGGAGTGTTGCTTGGACTTGCAATATCACACCTCATTGCTACATACAAA CCAGAGTGGTTCGTCAAGATAATTGGTCCAAACACGCGCAGAAACCGTTAGGAATGTTTTCAGTTTGATGATGATCCTTCAATGTA TGTCAAGTAGTTGATGATCCCTCTTGTATGGAAGTATCTATTTATGTTTGTTGTATCATTGTCTGATGTTTTTTTTTCTATTTTGT TTTCTATTAAGTAAGAATGGTGAATGTTTTGTAGTCAATTTCATGTGCATCTCTCTTTTTTTCTACTGAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAB02900 leucine-rich repeat disease resistance protein-like [Arabidopsis thaliana]	1350	1e-146
NP_189134 receptor like protein 39 [Arabidopsis thaliana]	1350	1e-146
NP_180861 receptor like protein 24 [Arabidopsis thaliana]	1332	1e-144
NP_180827 receptor like protein 23 [Arabidopsis thaliana]	1324	1e-143
NP_180114 receptor like protein 20 [Arabidopsis thaliana]	1322	2e-143

Swiss-Prot top hits (Blast detail)	Score	e value
C0LGV1 LRR receptor-like serine/threonine-protein kinase RCH1	294	1e-025
Q9LYN8 Leucine-rich repeat receptor protein kinase EXS	277	1e-023
C0LGS2 Probable LRR receptor-like serine/threonine-protein kinase At4g36180	272	4e-023
Q8LPB4 Phytosulfokine receptor 1	269	1e-022
C0LGE4 Probable LRR receptor-like serine/threonine-protein kinase At1g12460	261	8e-022

TrEMBL top hits (Blast detail)	Score	e value
Q9LRX1 Leucine-rich repeat disease resistance protein-like	1350	7e-147
O49329 Putative leucine-rich repeat disease resistance protein	1332	8e-145
O48849 Putative disease resistance protein	1324	7e-144
Q9SKK5 Putative disease resistance protein	1322	1e-143
Q9LJS0 Leucine-rich repeat disease resistance protein-like	1314	1e-142

Arabidopsis top hits (Blast detail)	Score	e value
AT3G24900.1 AtRLP39 (Receptor Like Protein 39); protein binding	1350	4e-149
AT2G33020.1 AtRLP24 (Receptor Like Protein 24); kinase/ protein binding	1332	5e-147
AT2G25440.1 AtRLP20 (Receptor Like Protein 20); kinase/ protein binding	1328	1e-146
AT2G32680.1 AtRLP23 (Receptor Like Protein 23); kinase/ protein binding	1325	3e-146
AT3G25020.1 AtRLP42 (Receptor Like Protein 42); protein binding	1314	6e-145

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			100%

Unigene Members	Member information