 |
Information for unigene UN36675
| FASTA Sequence |
| Unigene ID: UN36675 | Length: 972 |
SSR | | GGCCCTTTCTTCTTCTCCTCCACAAAGAACAGCCGTCACGTTCCTTCACCCTCCTCCGCGATAACAATGGTGAAACGGAAGCAACT
CTCGGAGGCACCACAACAACAACAACAACAACCATCCCCAGCCGAAGAAAACTGCAAATCCCTGATAAAGAAGCTCGCCTCCTGCA
AGCAAACCATCCGCGACCGCTCCCTGCGAACCCTCCTCCGCACATGGCTCCCGGAGCAGACCTCGATCCCCGACGAGGACATGAGG
AAGCTCTGGCAAGGCATCTTCTACTGCATGTGGCACGCCGACAAGTCTCTCTACCAGTCGCAGCTCATCGACCGCCTCTCCGCCGC
TCTGCACTCCCTCCCTCTCCCTCTCTCCGTCCACTACTTCGCCGTCTTCCTGTTCACCATGCGCCGCGAGTGGTCCCGCATCGATC
GGCTGAGGTTGGACAAGTTCTACCTCTTGATCCGCAGGTTCTTGCACGGGCTCTTCGCTCTCTCGGATTCGAGCTCGTGGGATTTG
GATCTGACGAGGCGGTTGGTGGGCGTTTTGTTCGACGGGACGTTTCTGGCTGGGGATAAGTTTCGGGGGAACGGGGTTAACTACCA
CGTGGCGTCTGTTTTCGTTGAGGAGGTTAGGTCGTTTCTTCCGTTGAGGAAGGAGGTTTTGGAGATTTTGTTTGGGCCTTTTGTGA
GGGTTATGGGGGTTGTTGGTGATAAGGTTTTGGTTGGGAAGATTAAGAGTAATTTGTTTGATGAGTTGCTTAAGATGGGGAAGAGG
AGTGAAGACAATCAAGAATAAGAAAGTGTCTCCATGAGTAGTGGAATGTTGAGTTACTTTTGTTTGGGTTGCTGCTTGCTTTTCTT
TCAAATTTTGTTTTAGTTCCAACTATTTAATACAATTTCTAGATTTTGTTTTTTTACTGATTTGAGTATTAAGAGAAACATCTTTG
CCATCAAAAAGGAAGATTTTATGCTG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197560 uncharacterized protein [Arabidopsis thaliana] | 990 | 4e-105 |
| XP_002874005 hypothetical protein ARALYDRAFT_910101 [Arabidopsis lyrata subsp. lyrata] | 978 | 9e-104 |
| CAN72961 hypothetical protein VITISV_016489 [Vitis vinifera] | 652 | 6e-066 |
| XP_002267225 PREDICTED: hypothetical protein [Vitis vinifera] | 650 | 1e-065 |
| CBI17871 unnamed protein product [Vitis vinifera] | 650 | 1e-065 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9Y7M6 Ribosomal RNA-processing protein 1 homolog | 266 | 1e-022 |
| Q14684 Ribosomal RNA processing protein 1 homolog B | 258 | 1e-021 |
| Q91YK2 Ribosomal RNA processing protein 1 homolog B | 257 | 2e-021 |
| P56182 Ribosomal RNA processing protein 1 homolog A | 236 | 4e-019 |
| P56183 Ribosomal RNA processing protein 1 homolog A | 236 | 4e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RY12 AT5g20600/F7C8_190 | 990 | 3e-105 |
| A5C227 Putative uncharacterized protein | 652 | 4e-066 |
| B9I4Z2 Predicted protein | 630 | 1e-063 |
| B9SR90 Nnp-1 protein, putative | 585 | 2e-058 |
| A2XYH9 Putative uncharacterized protein | 449 | 1e-042 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G20600.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 444 Blast hits to 431 proteins in 151 species: Archae - 0; Bacteria - 10; Metazoa - 196; Fungi - 114; Plants - 27; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | 990 | 1e-107 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
