 |
Information for unigene UN36764
| FASTA Sequence |
| Unigene ID: UN36764 | Length: 1108 |
SSR | | GGCTCTTCCACTTTCTCACTGCACAAACTCAGAGACAAACACAAACACAAAGACAAACACACACACACCATGAAGCGAACTACCTC
AACGAACTCAGAACCACAGAGTTACATGGAATCACCACACTCTCCTCTCCGATTCCACTCCCCTCTCTCAGACGCCGGAGATCCAC
CGCCGGAGAGCCGTTACGTTTCCCCCGAAGCCTCCCCTTTCAAACTCGAAAACCCCAACAGCAAGTTCCCGCCTCTTCCGCCTCCT
CCTCCTCAGTATCCGCCGCCGCCGCGGCGTCAGAGAAACGCGAGAGCAGCTTCTCCGTCGTCTATGGTGGTGCTCAATCGCTGGGT
GAGAGAGGAAGGTACGGAGACTACGACGACGACGACCACGAGGAAGGTTGGAGAATCGGCGGCGGCGGCGAACAGAGCGAGAAGAG
ACGAAGCGGTGGCTGTGGCGGCGGTGGGGTTTAGAGTGTGTGAAGTGGTTTTGTGCGTGATATCGTTTTCGATCGTGGCGGCTGAT
AAAACTAGAGGATGGAGCGGTGACTCATATGATCGCTACAAAGAGTACAGGTATTGTTTGTTTGTGAACGTTATAGCATTCGTTTA
CTCTGCATTTGAAGTTTGTGTCGCTGCTTGCTACATCGCGAAAGAGACTTACATGTTAAACTGCGGATGTCACGTCATCTTCGTCT
TCTTTATGGATCAACTTCTTGCATATCTTCTGATGTCGGCTTCCTCATGTGCTGCTACTCGAGTCGATGATTGGATATCTAATTGG
GGTAAAGATGAGTTTACTCAAATGGCAACGGCATCGATATCAGTTTCTTTTGTAGCGTTTGTGGCGTTTGCGGTCAGCGCTTTGAT
TTCTTCTTACAGGCTCTTCACTCATGCTCCCTCTTAGTTATAATCAGCTTTTGTGCTGTCTGAGACCAGATATGACTCTCGTCTTC
GTACAGTCTCTCTTATAGCTTAGGAAACCAGCATGGTAATGGTTCTTGCTACTCTTTGTGTGTAGAAGTATATATATTTTTAAATA
AGGCAAGCAATCAAATGACTGAGGTTGTGTATCAAGTCTTGACTTATTTTATTTAATAACTAACTATTATTAAACC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866511 hypothetical protein ARALYDRAFT_919556 [Arabidopsis lyrata subsp. lyrata] | 1060 | 4e-113 |
| NP_201088 uncharacterized protein [Arabidopsis thaliana] | 1056 | 1e-112 |
| BAB10851 unnamed protein product [Arabidopsis thaliana] | 888 | 3e-093 |
| XP_002511409 conserved hypothetical protein [Ricinus communis] | 680 | 4e-069 |
| XP_002321591 predicted protein [Populus trichocarpa] | 652 | 7e-066 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q501G6 UPF0497 membrane protein At5g62820 | 1056 | 4e-114 |
| Q84WP5 UPF0497 membrane protein At2g36330 | 545 | 8e-055 |
| A3A2W2 UPF0497 membrane protein Os02g0134500 | 365 | 6e-034 |
| C5XTX2 UPF0497 membrane protein Sb04g002820 | 358 | 4e-033 |
| Q9FNE8 UPF0497 membrane protein At5g40300 | 358 | 4e-033 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RB34 Putative uncharacterized protein | 680 | 3e-069 |
| B9IEQ8 Predicted protein | 652 | 5e-066 |
| A9P9T7 Predicted protein | 566 | 5e-056 |
| A2X0L7 Putative uncharacterized protein | 355 | 1e-031 |
| Q0JKN7 Os01g0661000 protein | 350 | 5e-031 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G62820.1 integral membrane protein, putative | 1057 | 3e-115 |
| AT2G36330.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT5G62820.1); Has 132 Blast hits to 130 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 1; Plants - 124; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 545 | 7e-056 |
| AT5G40300.1 integral membrane protein, putative | 358 | 3e-034 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
