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Information for unigene UN36848
| FASTA Sequence |
| Unigene ID: UN36848 | Length: 976 |
SSR | | AGAATACGAAACAAGAAGAAGAAGAAGAAGATTAGGGCTTTCACTGGATTTGAGGAGTCGTTACGTTACATCTCGTGTCTTCATCT
TCTTCTTCGCTTTTTGGTTTCTCTCTTTCGCTGTCCGAAAAGCTTCTTAGTTACTACTAAGAGTGAGGCATGTCTTCTGATACTAC
TGCCAAGGATTCATCTTTGACTGATTGGAAACAAGATATAGGACACTCTGATGATCCAGATTACAGAAGCAAAGAAGATCGTAAGC
CCTCCTCCAATGTTGAACGAGGTCAGTTTCTTGAAAGTTGGAACGAGAGCAAGAAGAGTAAACCAGGGTACCAAACGAGATACTTC
ATCATCAAAAGTCTAAACTACGACAATATTCAACTTTCCCTCGAGAGAGGGATCTGGGCTACTCAAGTCATGAATGAGCCTATACT
GGAAGGTGCTTTTCATAATTCTGGTCGAGTGGTTTTGATTTTTAGCGTGAACATGAGCGGATCATGGTGTAACCTCGAGATATCTC
CCGGAGCAAGAAAAGTATTTGCGATTCAACTCATGGGGTTTGCCTTTGGAGAGCCCTCTAGCGAGTACCCTAACCGATGATGATTT
TCTTAACATGGTGATTCCACAATCAAGAGTCACACAAGAGCCATCAAATAAAACAGATGATGGAAGCAATGGTTCTTCCAAAAACC
GGTCATCATCAAGAAAGAGAGGACGGGATTCATCCTAGTGTTCAAGCTCGAACCTCTACCGTGAAGTTTGCATCAAAAACGCATAA
CAATTGGTCAGTGCCATTTCGATAGCATGGTGATGGAGAAGCTGTTGTCATGCTGTATTCATGTTCATTTAGTCTGGTGGTTTTTA
AAAACCAGAAGACTGTAGTAGCTAAACAGTTTCTTCTTCTTCTTATTTTTTTGCCAAAACTTGTACAGTTTTAAATATGGCAAACG
CTTAAGCTTTTGGAAATCTAAACCCTGAAT
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002872637 hypothetical protein ARALYDRAFT_490016 [Arabidopsis lyrata subsp. lyrata] | 421 | 4e-039 |
| NP_192934 YT521-B-like protein [Arabidopsis thaliana] | 412 | 4e-038 |
| NP_974537 YT521-B-like protein [Arabidopsis thaliana] | 412 | 4e-038 |
| NP_001190703 YT521-B-like protein [Arabidopsis thaliana] | 412 | 4e-038 |
| XP_002275532 PREDICTED: hypothetical protein [Vitis vinifera] | 329 | 2e-028 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q0DA50 Zinc finger CCCH domain-containing protein 45 | 146 | 1e-008 |
| A9LNK9 Cleavage and polyadenylation specificity factor CPSF30 | 139 | 8e-008 |
| Q5R746 YTH domain-containing protein 2 | 135 | 2e-007 |
| B2RR83 Probable ATP-dependent RNA helicase YTHDC2 | 134 | 3e-007 |
| Q9H6S0 Probable ATP-dependent RNA helicase YTHDC2 | 133 | 4e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3EA50 Putative uncharacterized protein At4g11970.1 | 412 | 3e-038 |
| Q9SZ62 At4g11970 | 412 | 3e-038 |
| B9GKR9 Predicted protein | 304 | 9e-026 |
| B9RBY7 Splicing factor yt521-B, putative | 300 | 3e-025 |
| D5GAI5 Whole genome shotgun sequence assembly, scaffold_182, strain Mel28 | 154 | 2e-008 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G11970.1 YT521-B-like family protein | 412 | 2e-040 |
| AT4G11970.2 YT521-B-like family protein | 412 | 2e-040 |
| AT1G30460.1 CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding | 139 | 7e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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