 |
Information for unigene UN37039
| FASTA Sequence |
| Unigene ID: UN37039 | Length: 1457 |
SSR | | CGGTCTAACATGGTCTAAGATTTTATACATAAGAAGTGATAGGTTACTACAAAGAAAACAAATGATGAAATATACAAACCCTCTCC
AATCAATACCAACCCACATTCAAGTGACTGGGTTGAAGAGAAACAAAAGAACATGAACATAAACAACCCCAAGCCTCGTCAACTAC
CAAAGCACACAACCCCTCTCTCTCTCTCTCTCACATCCATGAAATGGAGTGTTAACAAATGAAAAAGGCAAAGAAGATGAACTATG
AACCTCAATAATGCAATTTCCTCATATACAGACAGAGATTCTATCTTCCCATGTACTCCGTATTCCTCAAGTACAGTAGTTTCCTC
GATTGCGCTGGAGGAGCTAATCCTGGGATGTCCCTAATGTCCTTGTTGTTCGGGTGTACGATCTTCACTACGATAATGGCTATCAC
ACCGCATACAATGAGAAACAGGAACATCATTATGCATTTATCAGTAGCCACCTGTCTCCCTATCTCTTTCACAAGCTGGGATGCTT
TCTTGATAGAGGACTGAATCGTGTCTAAGTGGTTCACAACGCGTCCCATTTGATCTGTCTGTCCCTTTAAATTAGCTGCAGTTTGA
GTTCCAACTTCAATTGTTTGTTCTACAACCTGTTTTGAGCGCTCAATGGCCTGATCAGTCTCATCCATTCTTTTCATTCCAGCATC
AACAAGCTCCTGGTTTGACATAGCTGAAGCCACTTGAACGTTTTCGTCAGCAGTAGGTTCGGCGCTGGGTCCAGCACCCATATCAA
AAAGTCAATCTTCTTGTTGCCAAGGGTACTCATATACGTTTTCTTAGTGCAACATAAGAATTGAGTTCCTTAATCATAGATTGTTT
CTCATCATTCAATTGCTTATTTACTTCGGGAGGATTTGAAGCTTCCTCGTCCTTGAGTTCACGGTCAAAATCCTTTACCAACCTTT
TACAGTCTCTCATCTTATCAGTGAGTTCCTCGAGTTGCTTGCTTTGTCTAGTTGAATCCTTCATCTTATCCAACCTCTGGAATCCA
TTCCTGCAATAACAGAACAACCATCAACAATCTCTTAAATCGAAGTTATAAGAAAGAGGAGAAAAAGCATTACGCGAGGGCTCGGA
AATGGTCACGGATTTCGCCATGGATCTGCTCCAATTGAGGGCTCATCGGGATATTTGAAGCCATCTCGCCGGAGATATTCACAACT
CCGACGATTAATCAAATCGGAACCCTAAAGAGTACTTAAATAAACACACACAGAAACAAACAAAAGCCCCCCAAAACGATAAAAAC
CCTAGCTTTTGACGATCAACTCAAGTTAAAGAGGCTTCTCCAGAAAACGGAAGGGAATTCAAATAAATATAATTAGATAACAATCT
AGAAAATGCACGAAACAGAGAGTGCGTGGAACAACGGAAAAGGGAAAGAGAAGAAGGAGAAGAAGAAGAAGCTTACGTCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566578 Novel plant SNARE 13 [Arabidopsis thaliana] | 729 | 1e-074 |
| XP_002885211 NPSN13 [Arabidopsis lyrata subsp. lyrata] | 729 | 1e-074 |
| XP_002894101 F11A17.20 [Arabidopsis lyrata subsp. lyrata] | 687 | 9e-070 |
| AAD49774 F11A17.20 [Arabidopsis thaliana] | 680 | 6e-069 |
| NP_175258 Novel plant SNARE 12 [Arabidopsis thaliana] | 680 | 6e-069 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LRP1 Novel plant SNARE 13 | 729 | 5e-076 |
| Q9LNH6 Novel plant SNARE 12 | 680 | 3e-070 |
| Q944A9 Novel plant SNARE 11 | 493 | 1e-048 |
| O88384 Vesicle transport through interaction with t-SNAREs homolog 1B | 129 | 2e-006 |
| Q9UEU0 Vesicle transport through interaction with t-SNAREs homolog 1B | 126 | 4e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q541Y4 Putative uncharacterized protein At1g48240/F21D18_3 | 680 | 4e-069 |
| B9S000 Novel plant snare, putative | 646 | 4e-065 |
| B9HXA1 Predicted protein | 627 | 6e-063 |
| C6TAL6 Putative uncharacterized protein | 625 | 1e-062 |
| A9NYG3 Putative uncharacterized protein | 553 | 2e-054 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G17440.1 NPSN13 (NOVEL PLANT SNARE 13) | 729 | 5e-077 |
| AT1G48240.1 ATNPSN12; protein transporter | 680 | 2e-071 |
| AT2G35190.1 NPSN11 (NOVEL PLANT SNARE 11); SNAP receptor/ protein transporter | 495 | 6e-050 |
| AT3G17440.2 NPSN13 (NOVEL PLANT SNARE 13) | 461 | 5e-046 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
