RadishBase

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Information for unigene UN37049

FASTA Sequence

Unigene ID: UN37049	Length: 1339	SSR
GGACTGCTTGCGACAAAGAGGAGAGCAATTTATTCCAGAGATTCACTTCGTTTTGCTTGTGTGTGTGTGGAGGGGATAACTACTAA AACTGTAATGAACTGCCTCTCTCATCATGCCCGTTCCTACATTTCCTTGGGGCTTCTCAAGAGATCCAGCTACGTCACTTCCAAGA TCCCATGGAACCAATGCTTTTTCATGCCTTCATCACCCTGTTTAAACCCTGCAAGCGTTGTGACTCCACTCGGACTCTCTAGACCT CATTGCTATTCCTCCAGATCTAAGGCTGGTAGATCGAAATTGTTGACCGCTGTTCCTGTTGCTGATAAAGAGAAAGACGCCTTCTT TGTTGTCCGGAAGGGTGACGTTATTGGAATCTACAAAGATTTGAATGATTGCCAGGCTCAAGTTGGATCTTCGGTGTTTGATCCTC CGGCTAGTGTTTATAAGGGATACTCGTTGTCTAAAGACGCAGAGGAATATCTTTCTTCTGTTGGGATGTGTTTGGCGCTCTCATGC CTTGTCTTTTCCAGGAGCCAGCTTCTTCTAAAGTAAAAGTATCTCAAGAAGAAGAAGATATCTCAGAGATGAAGTCAGAAGATATG AAACATGATATTCCTTCTGCTTCCACGTCATCGGTTTTTGATCAGCTAAAACCATCGGCTGTTACTTCAGATGAAACTTGCTTTAT TGAGTTTGACGGTGCATCAAAGGGGAATCCAGGTCTCGCTGGCGCAGCAGCTGTACTGAAAACTAAGGATGGAAGCTTGATTTGTA AAGTGCGTCAAGGGTTAGGAATTGCTACAAACAATGCAGCAGAGTATCATGGGTTAATCCTAGGGTTGAGGCATGCTATTGAGAGA GGTTACAAGATAATTAAAGTGAAAGGTGACTCCAAGCTTATCTGTATGCAGATTAAAGGTAAATGGAAGGTAAACAACGAGGTACT CTCGAAGCTGCACGAGGAAGCAAAACAACTAACCAAGGAATGTGCGTCTTTCGAAATCAGTCATGTACTAAGGAATCTGAACTCTG CTGCGGACGAACAAGCAAACTTGGCTGTCCGTCTTCCCGAAGGACAAGTTGAAGTGGCGTGAAGACTTTATACTTATTATCCGTGA ACGAAGATAGAGAGTTTGACAAACGAAGCCAATAAGAATGTGGTAAAGAGCCAGGATGTGCCATAATAGAGATTTTTTGCAGAAAG TGAAAGCAAAACAATGTAGAATCAATCTCCCAGAAACAGCTAGAAAATAAAATATCATTTGTCGTCTGACTTCGCAATTCACACTG AGATTCTTTCTGTTCTTATTTAATTTAGTGGGCTGAGGATTGGCCCAGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ACB59203 RNase H domain-containing protein [Brassica oleracea]	823	1e-085
NP_173819 RNase H domain-containing protein [Arabidopsis thaliana]	755	1e-077
XP_002890605 RNase H domain-containing protein [Arabidopsis lyrata subsp. lyrata]	716	4e-073
NP_199921 RNase H domain-containing protein [Arabidopsis thaliana]	623	2e-062
NP_001032054 RNase H domain-containing protein [Arabidopsis thaliana]	623	2e-062

Swiss-Prot top hits (Blast detail)	Score	e value
P64955 Uncharacterized protein Rv2228c/MT2287	227	8e-018
P64956 Uncharacterized protein Mb2253c	227	8e-018

TrEMBL top hits (Blast detail)	Score	e value
B2D2H0 RNase H domain-containing protein	823	1e-085
Q2V2Z6 AT5G51080 protein	623	1e-062
Q84TE0 AT5G51080 protein	623	1e-062
Q9LU66 Similarity to RNase H	594	3e-059
B9HVB6 Predicted protein	499	4e-048

Arabidopsis top hits (Blast detail)	Score	e value
AT1G24090.1 RNase H domain-containing protein	711	5e-075
AT5G51080.1 RNase H domain-containing protein	624	6e-065
AT5G51080.2 RNase H domain-containing protein	624	6e-065
AT5G51080.3 RNase H domain-containing protein	624	6e-065
AT3G01410.1 RNase H domain-containing protein	430	2e-042

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			100%

Unigene Members	Member information