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Information for unigene UN37116

FASTA Sequence
Unigene ID: UN37116Length: 937 SSR 
GGGCCGCGTTGTTCGTCATCTCTGTCTAAACTCTCCAGTTCTCTTGCTGATTAACGATGGAAGAAGGAGGAGGAGAAGGAAGTAGT
AGTAGTAGTAGCGCCGCCGTAGCAGGAGGAATCGTTCCGAAATCAGCGATGGAGGCTGTGAAACAAACACTGGCTCTCCTCGAGGA
AGTGAAACCGCAGCTCGAGGAGATGCTGTCTCTAGCCGAGCCAGAGGTTCTTGCCCAAATGCAGCCGTTGAAGCGAGCCAAAGTTA
TGTACATGCTCGCCGAAGCCACCACAACCATTTTCAATCTGAGGTTGAGATGTACGGGCGTTAATCCCGACGATCATCGTGTTAAA
TCTGAAATTGAGAGGCTTGACGTCTACAAAGAGAAGCTTCAGCGGTGTATGGATCGAAGCAAAGAACCATTGCGTCCAACTACAGT
CTTAAACCGTCAGGCAGCAACCCGTTTTATCGAACACTCTCTGCCTGATCTTTCATCTGCTCAAATGCAAAACATTAGAGACCTCA
GCAAAGGAGAGAAATCAAGGATGAGGTATTCGGAAACAAATGCTAAAAAGAGGAAATACCAATCAAATGAGAAACAACAGTCTGTT
CGATCTGCTGCGAAGGAATTTCTTGAAAAGGCAGCTCGTGAGTTTAATGGTAACAACGAAAATGGTTTGAAGGGCCCTCTAGTGGC
GGCAGCTGATGCTTCAGATGATGTTGAAATGGGTACAGCCTGAATTTTCCAAATATATTTTATATCATGCTGCTGATCTTTTTGGA
TTGTGCCGCAGACATTCCTCTTCCGTCCTCACCATCTTTTTCCGAGAGAAGTTGGTTTTCTCAACTCATCTTATCTGTTTGATGGT
GTCTTTTAGAATTCTATGGACCTACGGTTGGTGTATGTTGTAGATTGCATTTTGTTAGCAACTGATTTTTCATAATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197890 Sas10/Utp3/C1D family protein [Arabidopsis thaliana]8533e-089
XP_002872137 hypothetical protein ARALYDRAFT_489362 [Arabidopsis lyrata subsp. lyrata]8381e-087
XP_002285540 PREDICTED: hypothetical protein [Vitis vinifera]5721e-056
CAN80797 hypothetical protein VITISV_002765 [Vitis vinifera]5692e-056
XP_002324916 predicted protein [Populus trichocarpa]5593e-055

Swiss-Prot top hits (Blast detail)Scoree value
Q7TSU0 Nuclear nucleic acid-binding protein C1D1674e-011
Q5XJ97 Nuclear nucleic acid-binding protein C1D1568e-010
O35473 Nuclear nucleic acid-binding protein C1D1568e-010
Q13901 Nuclear nucleic acid-binding protein C1D1551e-009
Q5RBU4 Nuclear nucleic acid-binding protein C1D1551e-009

TrEMBL top hits (Blast detail)Scoree value
Q93VA9 AT5g25080/T11H3_908532e-089
A5B4W4 Putative uncharacterized protein5692e-056
B9IL67 Predicted protein5592e-055
B9HB62 Predicted protein5484e-054
B9RNV0 Putative uncharacterized protein5252e-051

Arabidopsis top hits (Blast detail)Scoree value
AT5G25080.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146), Exosome-associated factor Rrp47/DNA strand repair C1D (InterPro:IPR011082); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 42; Plants - 16; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).8556e-092

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information