Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN37658

FASTA Sequence
Unigene ID: UN37658Length: 709 SSR 
GATCGATCTATCATAATATCAACAGTCATGTTCACCCTCATCGCCCGATGCGCTCTCGCCTTTCCCGGTGGCCCACGTGCTTCACC
CACCACCGTTCCTTTGTAATATATATCGGTTGTAGTGTTTGAATACCTAAACGAAGCAGAGTTCGGATTCTTGACCGACACGTCGA
CGATCATCGAGATGTTTGTTCCCAACAGTTGGATCTGAGTCCCCGTGGTTGAGTCTAGACCGTTGACTGTTACGCCGTTCATTTTT
ATGATGGGGTCTTTGACTCGGAACACCGTGAAGACTAAAGTCAACACGATCGTGATGAGAATAAGAGATGTTACAGTGACGCAGAT
TAAGCACTTTAACCGGTTTTTGCGATGATTGAGAGTTTGTTTGTCGGTGGCGGGATAATCGCTCAACGGAAGTACGGTCGCTGGAG
CCAGTGGACGAACATGTTCTGGTTCGGTCATGGTGGTTCTTTTGTGTGTGTGTGTGTGAAGGGGAGTCGGATTTTTTACTTCTGGT
CATGTGAATTATATAAACCAATAAGTGATGGAGAATGTTGACTTTTATATGTACTTCGGTGTTTCATGTGTCGTTATTACTTTAAG
AGAAAATAAGAACATTAATGTAATGGGCCTAACTACTAACAAAGTTGGGATCAATTATTGCAGTGGAAAGATGAGAATGGTATTAA
ATTGGCTTTGATTTAACGGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002880220 hypothetical protein ARALYDRAFT_483760 [Arabidopsis lyrata subsp. lyrata]6112e-061
NP_182138 late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]5995e-060
XP_002277286 PREDICTED: hypothetical protein [Vitis vinifera]4051e-037
XP_002301379 predicted protein [Populus trichocarpa]3772e-034
ACU19833 unknown [Glycine max]3711e-033

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O82354 Putative uncharacterized protein5993e-060
A5CBV1 Putative uncharacterized protein4051e-037
B9GQE1 Predicted protein3772e-034
C6TDD1 Putative uncharacterized protein3719e-034
B9RDY9 Putative uncharacterized protein3629e-033

Arabidopsis top hits (Blast detail)Scoree value
AT2G46150.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54200.1); Has 137 Blast hits to 136 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).5992e-062
AT3G54200.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05975.1); Has 405 Blast hits to 404 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 405; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2076e-017
AT1G64450.1 proline-rich family protein1432e-009
AT3G05975.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54200.1); Has 119 Blast hits to 118 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1323e-008
AT4G23930.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G64450.1); Has 183 Blast hits to 177 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1199e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information