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Information for unigene UN37858
| FASTA Sequence |
| Unigene ID: UN37858 | Length: 1056 |
SSR | | GGAAACCCTAAATAGCTTCAAAGGCGTTTCCTTTCCGTCATTCATCATCTCTCCGCGCCTCTCTCTCTCTCTCAAACTCTCAGCTC
ACAGAGACGACAATCATCATGGGGAAGAAGAAGTTTGCTGATGAGAGACCTGTGGCTGAAAGCAAGCCGAGAGTTATGCGTCAGAT
TGATGAGATGTTTGATCAGCTTGAGCTTAATGAGTATGGAAGTGAGAGTGAAGACAATGATGGTTACCAAGAGGAAGAAGAAGAAG
AAGAGTTCAATGCTCAGAGCGTTGGTAATGATTTTATTTACGAGAAGCCGAAAGGTTACGAGCTTGATGATGAGAAGTATATGAAC
CCTGCGGATCTGTTGAAGAACAGTGACAATGTGAAAGACAAAGAGGAGCTTGAGAACATCATCCGCAGGTCTGTGCAGTACGGTGA
GGATTTGGTAAACGGCAACGAAGATGAGTTTGTGGAGGTGGTTGAAGAGAGCAGCGACGAAAGCGAGAAGTGGGATTGCGAGACCA
TAGTGACGACGTACTCGAATCTCGATAACCACCCTGGTAGAATCTGTGATCCGGAGAGAGCTAGGAAGAAGCTGAGCGAAGCGTTA
GCTAAGGCAAAGAGTGTGAATGGGAGTGGTAGTAGAATCATTACCCTCCAAGGCAAAGAGAAGCTTCCGGTTGAGTTTTTACCCGG
TAGGAGAGTTGAGCAAACAACCAGTGTCAAACCGAAAGCTGAACCGGTGAAGAGGAAGGCTCACGGGGAAGAGACGAAAGAGGAGA
AGAAAGAGAGGAAAGCTGCTGTGAAAACAGAGAAGAGGGAAGCGAGGAAGATGAAGAAAGAGACGAAGGAGCTTTATAGGTTTGAA
ACGCAGCGTGCTCAGAAAGCTGTTGCTGTTTCTGGTCCATCTTCTATTCCTCTTTAAGGGTAATACTAAACGTATCTCAGAGCCCC
AGTATTTTTTTTAATATCGTTCATGTAATATTTTGTGTTTTGTTCAAGATTTTGAATCTCTCTTATTTTTGTAAGGACGTCTTTAC
TTTTTTTACTAGTCAAGTTTCGAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_190568 uncharacterized protein [Arabidopsis thaliana] | 848 | 1e-088 |
| XP_002877717 hypothetical protein ARALYDRAFT_485357 [Arabidopsis lyrata subsp. lyrata] | 836 | 3e-087 |
| XP_002306905 predicted protein [Populus trichocarpa] | 601 | 5e-060 |
| CBI19797 unnamed protein product [Vitis vinifera] | 588 | 2e-058 |
| XP_002280700 PREDICTED: hypothetical protein [Vitis vinifera] | 538 | 1e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O02327 Protein LTV1 homolog | 135 | 3e-007 |
| Q7KN79 Protein LTV1 homolog | 132 | 6e-007 |
| Q4V838 Protein LTV1 homolog | 124 | 5e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SN19 At3g49990 | 848 | 9e-089 |
| B9H4I8 Predicted protein | 601 | 4e-060 |
| A2XH87 Putative uncharacterized protein | 514 | 5e-050 |
| Q84TS4 Low temperature viability protein, expressed | 514 | 5e-050 |
| B6TGN3 Low temperature viability protein | 497 | 4e-048 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G49990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Low temperature viability protein (InterPro:IPR007307); Has 1404 Blast hits to 1163 proteins in 173 species: Archae - 5; Bacteria - 61; Metazoa - 489; Fungi - 146; Plants - 69; Viruses - 17; Other Eukaryotes - 617 (source: NCBI BLink). | 848 | 5e-091 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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