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Information for unigene UN37868

FASTA Sequence
Unigene ID: UN37868Length: 1523 SSR 
CGGACACAAAAGCATTTATTAACAGATTTAACACAAGCAATTGATGAGAGTTACACGCAGAAAGAAACACAGAGAGAGTTTCTCTA
AAAGCCATTAAAGATATATACAATACTGATGTGTTTCTTTTCAAATTTTCAAACTAAGACCAACAAATCTGTGCAGAGTATGAAAT
GAGAAAACAAAGACAAAGGTTTGTATAAGGGACAAAAGAAAAAAGCAAAAGAATTGATTTGAGGCTTTAGAGATAAACAGAAACAA
ACTTAAGAGTGAAGCAACAAAGAAGAAACCTCTTTTTCAGTGTTGTTCATTGCTACTTTCCACTTTAATCATTAAAAGCTCATCGA
TAGGTTGTCGACATATGGGACACTTGTTTGACTGAAACCTCAGCTCTTTAGCGCAGTCACTGCACAAACACAAATGTCTACAAGGC
ATCACGGCGGTGTCCTTAGGTTCAGTCAAGCAAATGACGCATTCTTTGTCACCACTATCCTCTAACCCTGACGCAACATCATCTTG
AGCCGTCGAGTTATCGATACCATACAGCTCACGCAGCTCATACCTAGCTCCTTCGATCCATAGGATCTGTTTCACGACTTTCACTT
TGAAAGATCCATCGCCATCAGCCTTCTCCAGACACGCATGCGTGACTTGCTTGTGAACTAACGGTTCCTCTGAGCCCGAGCTCGGT
GAGATCACAGTCTCTGCTGATATCACAAGTGGGTAAACCTCTTCTGGTGACGGGCTCGATAGATCGTCGAGCGAAAAGAAACCTAG
GTCTGTTCCTGTCCCTGAAGGTTGTATAAACTTCTGTGCTGTGCCTTTTTGGAATGGGACTTTGGTTGGTCTGAAAGCTTCTGGAT
AATGAGGGACGATTGTGCAGTTTTCTTCCTCCTTTGCGAAAAATATGATAGTAAAACTGCCATCGAATACGGCATCGAAGAGGAAG
GAAACTAGGTGATAGCCAGGGTTAAGATCGTCTGATTCGAGCCTCACCGTATCTTTATGGACATTGACATCGTTCCTCACCTTCTT
GGCGCTCTGATGCTCCACCAACGCCTGAGGAGGCTGTTGGTCAACCACCACGGGAGCTGGACCGTAGAAAACCGGTCTCATCATCG
TGTTATTCCACCCATTGTAGAAATACGGAGGAGGCTGTTGCTGCTGCGGGTTTGGATTGTAGTTATAGCCGTAGGATCCGTAATTA
ATCTGCGGCGGAGGATGAGGCTGAGAGGGTGGGGGAGGAAGAGAGTATTGCGGAGCTGAGACGAGGTGGTTGTGAGTGTAGCTGTA
CTCGTTGTTCGGTGGTGGTTGAGGCGGCGGTTGTTGTGGTTGATCGGAGTAATAGTAGGGCGGAGGAGGAGGGAGGTGATGGTGGT
AGCGGCGGTGGTGGTTGTTTCGTCTACGGTTGCTGAAGGAGATCCCCATAGCTGAAGAAGAGAGAGTCGAAGACAGAAAGACAGAA
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAGATTTGGAAAGGAAAAGTCAAGATCAAAAGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197409 RING/U-box domain-containing protein [Arabidopsis thaliana]14101e-153
AAM78102 AT5g19080/T16G12_120 [Arabidopsis thaliana]14002e-152
XP_002884561 hypothetical protein ARALYDRAFT_317476 [Arabidopsis lyrata subsp. lyrata]12164e-131
AAF30307 putative RING zinc finger protein [Arabidopsis thaliana]12148e-131
XP_002871858 hypothetical protein ARALYDRAFT_909929 [Arabidopsis lyrata subsp. lyrata]11743e-126

Swiss-Prot top hits (Blast detail)Scoree value
Q6INH1 RING finger protein 1573399e-031
Q96PX1 RING finger protein 1573344e-030
Q3TEL6 RING finger protein 1573272e-029
Q7ZUL9 Probable E3 ubiquitin-protein ligase MGRN13201e-028
Q5XIQ4 Probable E3 ubiquitin-protein ligase MGRN13164e-028

TrEMBL top hits (Blast detail)Scoree value
Q84ME1 At5g19080/T16G12_12014101e-153
Q8L7V9 AT5g19080/T16G12_12014001e-152
Q9M8K4 Putative RING zinc finger protein12333e-133
Q8LA32 At3g0614011851e-127
B9RTT7 Mahogunin, putative10075e-107

Arabidopsis top hits (Blast detail)Scoree value
AT5G19080.1 zinc finger (C3HC4-type RING finger) family protein14114e-156
AT3G06140.1 zinc finger (C3HC4-type RING finger) family protein12313e-135
AT3G09770.1 zinc finger (C3HC4-type RING finger) family protein7027e-074
AT3G53410.1 zinc finger (C3HC4-type RING finger) family protein6247e-065
AT3G09770.2 zinc finger (C3HC4-type RING finger) family protein5574e-057

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  100%

Unigene MembersMember information