RadishBase

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Information for unigene UN37910

FASTA Sequence

Unigene ID: UN37910	Length: 2559	SSR
GAATGGTGGACTTAATCAGCAGCGAGTGGCTATATGTAACGCTGTTGCGGTTGCTGCTCTGCTTAACGCCACTCTAGTGCTCCCGC GGTTTCTTTACAGCAATGTCTGGAAAGATCCTAGCCAGTTTGGTGATATATACCAGGATGAACGTTTCATAGAGTATCTGAAAGAT GATGTGCATATAGTGAAGGATCTTCCTCAAAATCTAAAGCCATTGATAACAAGAATCTCAGCTTGGTCACTGATACAGAGCTTATA AAAGAGGCAAAACCAGATGATTACATCAAAAATGTTCTTCCTTTGTTAAAGAAGTATGGAATGGTTCATCTTTTTGGATACGGGAA TCGCCTCGGTTTTGATCCGTTGCCTTTTGATGTTCAGAGATTAAGATGTAAGTGCAACTTTCACGCGTTGAAGTTCGCTCCCAAGA TTCAAGAAGCAGGATCTCTCCTGGTGAAACGGATAAGAAGATACGAAACTTCGCGGAGCAAACTGGACGAAACATTGGTTGGTGAA TCCATGGCTAAATATTCAGCTAAAGAAGATCAAGAACCATTGAAGTATCTTGCTTTGCATCTAAGGTTTGAAGAGGACATGGTTGC TCTCTATGTGATTTTGGAGGAGGGGAAACCGAACGTAAAGAGCTTCAAGCGTGCCGAGAAGAACATTTCCCTCTTCTCCTCCAACG TTTGAAGGAATCAAAGTCTGTCTCTCCGGAAGTGTTGAGGAAAACAGGAAGGTGTCCATTAACACCAGAGGAAGCAACTTTAGTGC TCGCTGGTCTTGGCTTCAATAGAGGAACATATATATACTTAGCTGGATCTCAAATCTATGGAGGTTCTTTTCGTATGCTTCCTTTA ACAACGCTTTACCCAAATCTTGTGACTAAAGAAACTCTCCTTACACCACAAGAACTCGCACCATTCAAAAACTTTTCTTTTCAGCT GGCTGCACTGGATTTCATAGCTTGTGCAGCTTCAGATGTGTTTGCAATGACTGATTCCGGGAGTCAGTTATCGTCGTTAGTCTCTG GATTTAGAACATACTATGGCAACGGTCACGCACCAACATTGAGACCTAACAAGGAGAGGCTTGCAGCCATCTTATCGGAGAGTGAA ACAATAAACTGGAAGACCTTTGAAAGCCGTGTGAGGAAAATGATAGAGGAAGGTCACAAAGTTCGTCTTAGGCCTTATGGACGCAG TATCTATAGACAACCGAAATGCCCAGAGTGTATGTGTAAATTTTGATTCTTGGAACGTAAAACATTACTGTTCTGAAAATTTCGAT GTCTCGTTAGTACACAAAAACAGAATAAAGGCATTGTATATCATTGATTCTAGGTTTGTAATCACAATGAAACATTGAAAAGATGT TGGGCTAGAACCTCTTGAGAATCTCGTACTATGCCTTAACTTCTTCTCTCCAGTTTCCTCTCTGAGGATCTTCTTCCTTCCGAGTC TCGTCTCCGTTGTTGCGCGAAGGCTGAGTATCCAGAACCAGCACTTGAACCAGATACAGGAGCTGCACTACTCCCAGCTGCTAGAG GTGGATTCTTCACATCTCCATCAACCTTATCCCATTTGGATTTCTTGTTTGGTCTGCCATCACGAGCAGCAATGTCAGTTGGTGCA GAGGGCAATCCAGTAGTAGCTAAAGCTGGAACACCTGGGATAGGGATGTTAGGCTTTTGGGGAGCGAATACCGCAGCCACAGGTTG AGTGCCAACGGAAACAAAGTCGAGCCTTTGGTTTTTCTTGCTTTCCTGTTCCTTTCTTTCCCTCTCATGCTTCATGTCAAGTTCTA TTGCATCACAGAAGTCACTAGGGTCATATCCATTGGGGTCAAAGACGTCTTTACTGAAGCAAGAACCAGTCTGATCAATATCTTGA TAACTCACAGCATGCAACAAGAAGTCAGGATTCCTATATTCTTTTCTATTCCGCACTTCATTATTGAAACTCTTCCCCATCTTCTT CAAGCTCAGAAACTTGTCTATTTTCCTTTGCAGCTCCTCGGAGCACTTCTCCTTAGGGCGCGGAGGAAGGAACTGATCCAATAACG TATCAGTACTTTCCCCTGACGTATCCTCACCATTCCCAACCCTAGACTCAAAATTCATTGGACTGCTACTCCGATCAGGTCTCAAT GATTCGTCGTCGTTGTCGAGTGAACGAGGGGTGGCGTGAGCGCTTGAAGGTCCACCAGGCGTTCTGGAATCTTCTCCTCCTCCTCC TCCTCCTCCTCCTCTCTCTTTCTCCTCGTCCATAAAGTTAGCTTCTTCTTCTGGCTGACCACCACCCTCTCCAGTTCGTTCCGCTT CTTCCTGGTTTCTCTGCTCTTCCTCCTCGGCGTCTTCCATCTCTTCGTCATCCTCGTCACTGTAAACGGAGAGTAACGCGATTCCT TCAGAGTGCTTCTTCTTCGACGCCATGATCAATTCAAGACTAGGATTAGCTGAATTCAAATCCGATTGCAAGGACAGATCAGATTT GGAGGGGGAGAGGAAACGGAAACGGAAACGAAGAAGCTAGGGTTCCTCCAAAATTGAAATCGCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002893554 hypothetical protein ARALYDRAFT_473137 [Arabidopsis lyrata subsp. lyrata]	986	4e-104
NP_174215 O-fucosyltransferase-like protein [Arabidopsis thaliana]	981	2e-103
AAF88118 Hypothetical protein [Arabidopsis thaliana]	981	2e-103
NP_001117377 O-fucosyltransferase-like protein [Arabidopsis thaliana]	981	2e-103
NP_001117378 O-fucosyltransferase-like protein [Arabidopsis thaliana]	981	2e-103

Swiss-Prot top hits (Blast detail)	Score	e value
Q8W486 DUF246 domain-containing protein At1g04910	224	4e-017

TrEMBL top hits (Blast detail)	Score	e value
Q9LP50 At1g29220	1305	3e-141
B3H6X4 Uncharacterized protein At1g29200.3	981	1e-103
Q5BPY9 Putative uncharacterized protein	981	1e-103
Q9LP49 F28N24.11 protein	981	1e-103
B9S8B0 Putative uncharacterized protein	896	7e-094

Arabidopsis top hits (Blast detail)	Score	e value
AT1G29220.1 transcriptional regulator family protein	1306	1e-143
AT1G29200.1 unknown protein	982	4e-106
AT1G29200.2 unknown protein	982	4e-106
AT1G29200.3 unknown protein	982	4e-106
AT1G11990.1 unknown protein	715	4e-075

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			50%


11	2			50%

Unigene Members	Member information