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Information for unigene UN37962
| FASTA Sequence |
| Unigene ID: UN37962 | Length: 955 |
SSR | | GGAATCCACACATCTTCATTGCTTCAGCGCCCATTCAAGCAACAGTACTCTCTCTCCTACCTTGCTCTCTCTCTCTCTCACTCCCT
CCCTGCAAATTCATGACGACGGAGACCGACCTTGAGCTTCGACAATCTCCAATGGCGGAACAACAGCCAAGCTTCAATCTCCCACC
GTATCCTCAGATGATCATGGAAGCGATCGAAGCATCAAGCGACGCGAACGGCTGCAACAAAACGACGATCGCGAAGCACATCGAGT
CAACTCAAACCGCCGCTCTACCGCCGTCTCACATGACGCTTCTCAGCTACCACCTCAACCAGATGAAACAATCCGGCCAGATCGTG
ATGGTGAAGAACAACTACATGAAGCCAGATCCGCACGCTCCCCCCAAGCGCGGCCGCGGCCGTCCTCCGAAGGCGAAACCCCAGGG
AGATTCGAGCCACGTGGCGGCACCTCCAGCTCCTCCCGTTACTTCGCCGAGGCCTAGAGGTCGTCCTCCCAAGGCGAAGGATCCTT
CATCGTCGGAGGTGGAAGCGAAGGTTGTATCACCGAGTGGTGGTTCCGGGAGGCCACGTGGACGACCACCGAAGAAGCAGAAGACG
GAATCCGAGGCGGTTAAAGCCGATGTTGAGCCTGCGGAGGAAGCTACGGCTCCGGCTAGTACTGGGGAGCGTCGAGGGCGTGGAAG
GCCATCGAAAGTGAAGCCTGCGATGGTGCCTGTTGGTTGCTGAGGTTGAGACTTGAGCTAATAATCGAATAAGCTTTGATTAGAAG
CTTAAGCAACAAAAAAAAAGTTCTTTTTAAAATAATTAGTATTTTTTTAAGTTGAGTTTAATGGTTAATTGTGTGTTATTTTAATT
TTAGGGGTTGAGTAGCGTTAAAAAAATGTCGTTTGAGAAAATGTAATTCGTGTTTGCATGTGGTGGTGTGATGTATAAATTTCGGG
TATTTCTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAF22135 high mobility group protein I/Y [Brassica napus] | 787 | 1e-081 |
| XP_002875083 predicted protein [Arabidopsis lyrata subsp. lyrata] | 629 | 3e-063 |
| NP_172943 high mobility group protein A [Arabidopsis thaliana] | 620 | 3e-062 |
| CAA71797 HMG-I/Y [Arabidopsis thaliana] | 614 | 1e-061 |
| AAM60937 linker histone protein, putative [Arabidopsis thaliana] | 559 | 3e-055 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q00423 HMG-Y-related protein A | 360 | 2e-033 |
| Q10370 HMG-Y-related protein B (Fragment) | 303 | 7e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SEH2 High mobility group protein I/Y | 816 | 4e-085 |
| Q43386 AT1G14900 protein | 620 | 2e-062 |
| P92954 HMG-I/Y protein | 614 | 1e-061 |
| Q8LGC1 AT1G14900 protein | 559 | 2e-055 |
| A9PDE5 Putative uncharacterized protein | 459 | 9e-044 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G14900.1 HMGA (HIGH MOBILITY GROUP A); DNA binding | 639 | 7e-067 |
| AT1G48620.1 HON5 (High Mobility Group Family A 5); DNA binding | 156 | 7e-011 |
| AT1G49950.3 DNA-binding protein, putative | 117 | 2e-006 |
| AT1G49950.2 DNA-binding protein, putative | 117 | 2e-006 |
| AT1G49950.1 DNA-binding protein, putative | 117 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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