RadishBase

| | | |

Information for unigene UN37996

FASTA Sequence

Unigene ID: UN37996	Length: 1274	SSR
GGTGAGAGAATCTATGAATATGTAAATGCTTAAACAGATAAATTGTGATAGAAATAATTTAAAAAAAAAACACATTAATATTCATC GGCAGATGATTAAACTTAAAAAAAAAAACCCTGTGTTTTCTTAACCTTTGAGTGAGTATTTCTTCCCAGTAAACACCTTAAACTTA GCTTCATCAGACTTCGTCGAACTTTCTTGCTCCACGTTCTTTGGATCAACTTTCACATTTGCTTTTGAAGTTTGTTTGCTGTTTGA GCCAAAGACGAGCTTCCCTGATTTTTGCGGTGGCGTTATGCTTGACAGCTTCTCTTCATCCTTTCCCTTCTCAGTTGGCTTCTCTT CTTGTTTTGTCTCTTCTTGTCCAGTCGATTCTGTTTGTGTCTTCCCATCCAAACGCTTTCAGGACCCAGTGAATGGCGTGAACTTG GGAACTTTGCTTGCTGGCTCCTCTTCCTCAACTTGGCGAGTTCGCTTCTTCAGAGGAGTCAGATTCTGCGGCTTCTCAGGTTCTTT GTAATCAAGAGGAGGAGCGAAATCAACCTCGCAGTCCGTTTCTATGATACTCACAGCTGATGACGGCTTCGCTTCAACCACATTGA TAAAATACTGCTTGTTGTTGTAAGGAACCATGATTGTGTCGCCAGTGGTTAAGCAAGAGTAGCTCCTAAGCGTAGTCTCCAAGATG GCTTTTGGGTTGGTAATGTCCAAGAAATCTTGAGTGTGAGGCTGAAGCTTGATGTAAGTCCCTTTCACCAAACTCATATTCTTGAT TCTCACAATGTCTCCTTCTTGAAGAGACATGTTTTGCATCATCCAATAGGGAAAGTAAACAAGGCCTTCGTCTGCGGTGAACTCGA GTACACCACAATGTGTGATCTTGCCAACAGATTCATTACTCAGTTGAAACAACATTGGGTACTCAATATGCAAAGAAGCAAGACGG TTGAGAGCGGAAGGAGGCATTATAATTTTGTCCCCCTTGTCAAGATGTGCCTTTTCAATGAATGTGACAGGGTAACAACGGTAAAC TGCTCGAAGCTAGACTCATCATCTCCATTAAACTCCATTGCCCACCACAAATCAATATAAAAAAGCAAACGATCTGATTTTTAGGG ATTATTTTTGGTGTTTGAAGAAGATCGGAGAAGTTTTGGATTCTTCTTCTTCTTCTTCTTCTTATCAAGGAGGAGTCAAAAGGCAG GAGGCAGCAGATCGGATGAGCTGAGATTTTGGAAAGTTTGTTTTGATTCTTTTATAGATTTTTAACCCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_973557 ubiquitin fusion degradation UFD1-like protein [Arabidopsis thaliana]	1312	3e-142
XP_002879200 predicted protein [Arabidopsis lyrata subsp. lyrata]	1280	1e-138
AAC33233 putative ubiquitin fusion-degradation protein [Arabidopsis thaliana]	1210	2e-130
NP_180471 ubiquitin fusion degradation UFD1-like protein [Arabidopsis thaliana]	1203	1e-129
ABK94471 unknown [Populus trichocarpa]	1011	2e-107

Swiss-Prot top hits (Blast detail)	Score	e value
Q55BK0 Ubiquitin fusion degradation protein 1 homolog	614	1e-062
Q9ES53 Ubiquitin fusion degradation protein 1 homolog	577	2e-058
Q92890 Ubiquitin fusion degradation protein 1 homolog	573	5e-058
P70362 Ubiquitin fusion degradation protein 1 homolog	572	7e-058
Q9VTF9 Ubiquitin fusion degradation protein 1 homolog	522	4e-052

TrEMBL top hits (Blast detail)	Score	e value
Q6NLS0 At2g29070	1312	2e-142
O81075 Putative ubiquitin fusion-degradation protein	1210	1e-130
Q3E7H7 Putative uncharacterized protein At2g29070.1	1203	8e-130
A9PDL8 Putative uncharacterized protein	1011	1e-107
B9GJA6 Predicted protein (Fragment)	1003	1e-106

Arabidopsis top hits (Blast detail)	Score	e value
AT2G29070.2 ubiquitin fusion degradation UFD1 family protein	1313	7e-145
AT2G29070.1 ubiquitin fusion degradation UFD1 family protein	1204	3e-132
AT2G21270.1 ubiquitin fusion degradation UFD1 family protein	920	3e-099
AT2G21270.2 ubiquitin fusion degradation UFD1 family protein	920	3e-099
AT2G21270.3 ubiquitin fusion degradation UFD1 family protein	920	3e-099

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			67%


7	1			33%

Unigene Members	Member information