Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN38167

FASTA Sequence
Unigene ID: UN38167Length: 1181 SSR 
CAATGAGCATGAGATTATTTATCTTTTGATGAAACAAATGTACATTTTTGTAAGATTACAAAGACTTTAGAGAGAGAGAGCAGCGG
GGTGATGATGGATTCAAGAGTTATTGTGAGAACTGGAACGAGAAGCCCAAATACCAAACACAAGAAACCAGAAGATGAACAAGATT
GCCCAGTAGCGTGCAGGACCATACCTGATCCTAGTGAGCACAACAAATCTGAAGAAGATGACTATTATTAAAGCGCATAGACCACC
AAGAAGGATATGAAGTCCACTCCTAGCAGTCTCCTTTCCAACACGAGGAGCAACGATCCAGACCAAAGTAACAGTGAGCAAACCGG
TAGCAAGTAGAATCCCAGTACCTTCCACAGCCCATTTAGTAGCACGGTTCTCCATAGGCAAGACACCAAAGTTCACAGCACCTAAA
GGTTGTTCTGGCATAGCCTGAGAAGCTGCAGCAGAGCTACTACTGTTGTTGTTATTATTATTCAGAGCATGGGGGCCAAACCATGA
AGATATCTCACTTAGCCTTTGCCTTCTAATGCCAGCAGCTACATCTGTATCTACAGTTGAATCTGTATGCAGCGCCGTGTAATCTC
TCAAGGCAATGACCACTTTGTTGAAGTCAGCTGTTTTTATATTCTCAGCAGCTATCCCACAGATTTCACACACTGTTGATCCGTGG
TTGAGAAACCATTTGAGCGCGCAAGCGTAGTGTAACAAAGCAAGCTCGTTTTTGCAAGAACATCCGAGTTCAATCAAAGGATCCTG
GTGCTGCACCATTCCCATTTCGATATCATTGACGATGGAACTCTTCTGCTCAGCAGCCTCTGTAGCTTTGCTGGCAACATCATCAT
CATCAACTGTTTCGGTTTTAAGAGCTTCTGGAAGAAGAACGGTAGGAGTGATCCCCAAGAACCCTAAGGCAGCATCTCCTCGTTTG
TCGGACTCTGCAGAATGGCATACACGACAAGTCGGTAACCCGGAGTCACTGTCTGTACTGTAACGCGCCACAGCTGCTAGTTCCTC
GTTCTTGATCGGTGGACAATCGTGATCATTGACTCCTGTCTCCAACTGATTCTCTTTACCCATCAAGCCAGGAATAGAAAAATCTT
TATCTCTTCACAAGACCACAAATAAGCTCAACTCCTAATAATATTCTACTTTATGGACATTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002307061 predicted protein [Populus trichocarpa]8695e-091
XP_002310542 predicted protein [Populus trichocarpa]8623e-090
XP_002864866 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]7191e-073
NP_201183 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]7064e-072
XP_002871357 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]6582e-066

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
B9H4N8 Predicted protein8694e-091
B9HF63 Predicted protein8622e-090
Q8GUG6 At5g637807063e-072
Q93ZD2 AT5g63780/MBK5_266552e-066
Q9C5A2 At5g087506552e-066

Arabidopsis top hits (Blast detail)Scoree value
AT5G63780.1 SHA1 (shoot apical meristem arrest 1); protein binding / zinc ion binding7062e-074
AT5G08750.1 zinc finger (C3HC4-type RING finger) family protein6551e-068
AT5G08750.2 zinc finger (C3HC4-type RING finger) family protein6551e-068
AT5G08750.3 zinc finger (C3HC4-type RING finger) family protein6551e-068
AT2G34200.1 zinc finger (C3HC4-type RING finger) family protein1505e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information