RadishBase

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Information for unigene UN38171

FASTA Sequence

Unigene ID: UN38171	Length: 823	SSR
CGGCACAGTTTATGTTAAATTTAGTTCTAAACATCTAGAGTTCTAAACAAATTGCCGTTTATGTTAAATTACACATAAACTACACG TGATGCATCCATTCCATACAAAAAAATACTTCTATGGTATTTAGCTGTATATATATATATATATAAATACAAGAATACAAGGCTCA AGAAAGGAAGAAACTAGCTAATTGCAAGCTGTCTTGTAATCAAACTCAGACTTTGCAAGACTTGGCAAGTGGTTCACAGTCTTTAT ATATCTCCAAACCAGACTGATCAAGTTGGTCTTCCTCAAAGCAAGCGCAACGTTTGCTCATCGAACCCGTTATTGCTATCTCCAAA GGTCTTTGTACCAATCTTGGCACCCCAACATCACACCAAACCTTACCACCTTCTTCTTGACTCCATCGTGAGTTGCAATTCTTTTG CTTGTCTTCTTCAATCTTTTGTTTCTCCATGAGTTGTGCACCTCTGGAGGCTTTTGCTTCAGCTCCTTTTAAGTGCTTAGTGGGAT TACCTTGGCTATCGTAGTACCGTCCAACAAGCTTCCCAACAGGAGTGTAGGTCCTGGAGTAGAAACCTCGCCAATCCACTATGCTC TTCACCTCACTGCTAGATAACCCATGTAACGAATCTGTAAGTCCATCTCCTGTAAAGTTGCCAGAAACAAATGCACGAGAAGCATC TCTTCCAGAAAAATGGTTGTAACTTCCTCCACTGCCGTAATGAGATTTCCCTTTGGTCACATCATATACAGATCCAAGAATCCCTA AGAGTATAGGTAACGTTTCATCAGTGCCATTGTACAATGCCAATTCTTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_567451 membrane-associated progesterone binding protein 4 [Arabidopsis thaliana]	1012	8e-108
AAM60935 unknown [Arabidopsis thaliana]	1011	1e-107
XP_002870269 predicted protein [Arabidopsis lyrata subsp. lyrata]	991	2e-105
XP_002323190 predicted protein [Populus trichocarpa]	871	2e-091
ABK93240 unknown [Populus trichocarpa]	865	9e-091

Swiss-Prot top hits (Blast detail)	Score	e value
A2CES0 Neuferricin	444	3e-043
Q5SSH8 Neuferricin	370	1e-034
Q6AY62 Neuferricin	364	5e-034
Q28FI8 Neuferricin	362	8e-034
Q60YT6 Neuferricin homolog	352	1e-032

TrEMBL top hits (Blast detail)	Score	e value
Q2HIW2 At4g14965	1012	5e-108
Q8LGC2 Putative uncharacterized protein	1011	7e-108
B9IHF2 Predicted protein	871	1e-091
A9PA37 Putative uncharacterized protein	865	6e-091
C0PBG5 Putative uncharacterized protein	792	2e-082

Arabidopsis top hits (Blast detail)	Score	e value
AT4G14965.1 AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4); heme binding	1013	3e-110
AT2G24940.1 AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2); heme binding	223	1e-018
AT3G48890.1 ATMP2; heme binding	204	2e-016
AT5G52240.1 MSBP1 (membrane steroid binding protein 1); steroid binding	178	2e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			100%

Unigene Members	Member information