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Information for unigene UN38188
| FASTA Sequence |
| Unigene ID: UN38188 | Length: 1129 |
SSR | | AGCTACAAGTTTAGCAATGACAGAGGCTTTTTAACCACCATGAACCAATGATCATATCGAGTTTTTTTTTTTCTCTTCAAGTCTCG
GCAGGATAGGTGTTCGAGTCGTGGTGATTAGCATATCCTCCATTGTTGTAACCTTGTCCTGAGTCTCCTCTCCACTACTTGTTCGG
GCTTCTTCCCCAAGAAAGTCTGACAGTGTTCTTGCCTATGACTGTCCCGTTCAAACTCTGGATGGCATCATCAGCACTCTTCCTGT
TAGCTAATTGGACGAATCCACATCCTTTGCCTACTGGGATCTTCACTGAAACAACCTCTCCAAACTGGGAGAAAGGTTGTCTGAGG
TCTTCTTCAGTAACATCAGGATCAATTCCACCAACAAATATTGTTGAGTTGTTTGATTCGCCATCAGACTGTGAGCCATGAGCCAT
GTAACCATTTGCTCCATGTCCACCAGCCAGTATCAAAGCTTGTGAAGGATGATGATGTTGTTGCTGATTAGCAACGGCTCTTTTAG
GGGTCGCAACACCTACACGCATCTGCCTGTTGGAACAGTAAGCTCCATTCATCTCCGTCAAAGCCCTTGATCTCTCGTTCTCATCA
CCAAACCTAACAAAACCGTAACCTTTGGACCGGCCGGTGTTGGAGTCGATCACAACTTTAGCGCTCTTGACAGATGGATATCTCTC
GACAAAGAGCTCTTGCAATAAAGTGTCGGTCACATCTGGAGACAAATCTCCAACGAATATAGATAGCTCTGGACCATTCTCAACTG
CTCTCTTCTCACCAGTGCTAAAAGATGCCCAGTTTAGACGGAAGAGCTGCTCGGAGTTTGGCATTACCGAACCGTTAAAGTTCTGA
AGAACCTCTTCAGCTGTAGCTCGTGAAAGAAACTCAACAAAACCATACCCTTCTGATTGACATGTTAGCTTGTTACGAATCACTTT
CACAGAAGAAACCTCGCCGGTGTGAGAAAAGCAGTTGTGGAGATATGTCTCGTCCAATAAAGAAGATCACCAATCCATAGAGTCTT
CACATCATCTCCAGATCCACGCTCATGTGTCTTGTGTTGCTGTTGATACGACGCGTATTGGAAGTGAGGATGGTGCTGCTGCTGCT
GCTGATAATTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885294 RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata] | 1399 | 2e-152 |
| NP_188544 RNA-binding protein 47B [Arabidopsis thaliana] | 1390 | 2e-151 |
| AAM67293 nuclear acid binding protein, putative [Arabidopsis thaliana] | 1390 | 2e-151 |
| BAB02953 DNA/RNA binding protein-like [Arabidopsis thaliana] | 1288 | 1e-139 |
| NP_175383 RNA-binding protein 47A [Arabidopsis thaliana] | 1218 | 2e-131 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 556 | 4e-056 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 477 | 6e-047 |
| Q1RMJ7 tRNA selenocysteine 1-associated protein 1 | 354 | 1e-032 |
| Q9NX07 tRNA selenocysteine 1-associated protein 1 | 354 | 1e-032 |
| Q5R462 tRNA selenocysteine 1-associated protein 1 | 350 | 3e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WW84 At3g19130 | 1390 | 1e-151 |
| Q8LFI9 Nuclear acid binding protein, putative | 1390 | 1e-151 |
| Q9LJL7 DNA/RNA binding protein-like | 1288 | 9e-140 |
| B9N4W3 Predicted protein | 1139 | 2e-122 |
| B9HRX8 Predicted protein | 1126 | 6e-121 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G19130.1 ATRBP47B (RNA-binding protein 47B); RNA binding | 1391 | 6e-154 |
| AT1G49600.1 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding | 1218 | 7e-134 |
| AT1G11650.2 RNA-binding protein 45 (RBP45), putative | 801 | 1e-085 |
| AT5G19350.1 RNA-binding protein 45 (RBP45), putative | 773 | 3e-082 |
| AT5G19350.2 RNA-binding protein 45 (RBP45), putative | 767 | 1e-081 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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