 |
Information for unigene UN38448
| FASTA Sequence |
| Unigene ID: UN38448 | Length: 1085 |
SSR | | CAAAGAAACAGAGTATTATTCAATCATATAAAAAAACTGTACACAGCAGTCATCAAAACTAACAAAATGAACAAGAACACGTAAAA
CTGGTGAGGTGTCGTGGGGGAAACATAACCGGGCTCCAACAAGAAGCCATCCAGACTAAGCCATACAGTCCTCTTCTTTTAAAAAG
CACTGAACTTGCTCAAAGGCCTCAATGGCGATTTCAGCTGGGGTAAGATCTGACACGTTTCTGTACCCGATCTTTGATGTGATATT
CTCCAAAGAGACTCTCGCGCTTGCGTTTGTGTATGCTTCACCACGTGCTTCCCATATAGTTGAAAGACGGTTTAAAGCCACTGTGT
ATGGGTCTCCTCCTGACTGATCATCATGTAACAATGGTCTTGAATTAGTTCCCACAGCAGCAATTCTTTGCGCTAAGGCTTCTAAG
GGAACATCAAGCCAAATGCTAATACCTTTATGCATGTACTTCCAGTTAATGGGTCTTATAACCGCACCTCCACCTGTTGACACAAC
AACTTGGTGGTACATCAGAGAGAGCTTCTTTAGTGCCTCCGTCTCTTTCTCTCTGAAGACACTCTCACCGAAATGCTCAAATATCT
CAGTTACAGAAGTTCCATTCATCGCCTCCTCGATCAATGTATCACAACCAAAGAAGGAATAACCAAGTGCTCTTGCCATGATCTTT
CCTACTGTCGTCTTCCCGGAACCCATCATTCCAACAAGATACATAGATCGTCCATTTAAATACGGTTTGACCTCTTCAGCTTTTCT
CTTCAAAACAAGTTCTTCATCAAATGGTGAATGAAGAATATTTCCAGTTTCCAACAATGCTGAGGAGTTCTTGTCCGAAACGGATC
TTTGTCGAAGATCCCTTCTTTTGTCAGGTTTCAAATGAACTATAAGCCTTTTATTCTCTTTGATTCGCCCTAGCTGAGAGTAACGT
AGAGAACCACGAGGTTTCCCTTCAAAATTTCTCCAATCAATACATGGTGCGGAGTAGTGAAACCTCTGAACAGCTTCCATATTCTT
TTCCCCTGACGGAGCAAACACGAGATGCAGAGGCTCTCTCTCTCTCTCTCTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_195664 shikimate kinase 2 [Arabidopsis thaliana] | 1195 | 7e-129 |
| XP_002866854 shikimate kinase family protein [Arabidopsis lyrata subsp. lyrata] | 1170 | 6e-126 |
| 3NWJ Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis Thaliana (Atsk2) | 1073 | 1e-114 |
| XP_002878581 hypothetical protein ARALYDRAFT_320039 [Arabidopsis lyrata subsp. lyrata] | 995 | 1e-105 |
| NP_179785 Shikimate kinase [Arabidopsis thaliana] | 973 | 4e-103 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SJ05 Shikimate kinase, chloroplastic | 973 | 2e-104 |
| Q00497 Shikimate kinase, chloroplastic | 710 | 6e-074 |
| Q31PU5 Shikimate kinase | 318 | 2e-028 |
| Q5N4D3 Shikimate kinase | 318 | 2e-028 |
| Q8DKH7 Shikimate kinase | 302 | 1e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8GY88 At4g39540 | 1195 | 5e-129 |
| Q9SVA4 Shikimate kinase-like protein | 959 | 1e-101 |
| A8MRG1 Uncharacterized protein At2g21940.3 | 850 | 5e-089 |
| A5AZY1 Putative uncharacterized protein | 761 | 1e-078 |
| B9VU88 Shikimate kinase | 761 | 1e-078 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
