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Information for unigene UN38563

FASTA Sequence
Unigene ID: UN38563Length: 1049 SSR 
GGGATTTCAAACATTACAGATTTGATATTTTCCACAAAAGTCTCAATCTTCTTTATTAATACTGAGATCATCTTTCTAGATTCATC
CTTAATCTCTCTCTATCTTTCGGTTAAAAGGTCTCTTCTGTATATAAAACACTACTCTCTACTCTCTCTCTCTGTGAAATCAAACA
CAAAGATGGATCATGATCTCCAGATCTTCCCGTTACTCTCCTACGTCATCCACCACTCCGATCCCGCTTCCCACGCCCCACCCACT
CTCTCCATCCAACACTCCCTCGCCAATCGTTACCCTCTTCTCACCAACCCCCACGTCATCTCCACACTAATCTCTCTCGCAACGAT
CTCAAGTTACTACCTGATACAATCTCAGGGCTTGGGAAGTTAGAGGAGCTTGATGTATCTTCAAACCTTCTCGTGTCTCTTCCCGA
CTCTTTCGGACTGTTACTTAACCTGAGGGTCTTAAATGTATCCGGGAACAAGCTAACTTATCTCCCGGAGAGCATCACGCAGTGCA
GGTCACTAGTGGAGTTAGATGCTAGCTTCAACAACTTGGCTTCTCTGCCTGCCAACATTGGATACGGGTTACTCAACCTCGAAAGG
CTATCGATCCAGCTGAACAAGATCCGTTACTTCCCTAATTCCATATGCGAGATGCGGTTTCTGAGGTATCTTGATGCACACATGAA
CGAGATCCACGGCCTTCCGATAGCTATAGGGAGACTCACTAGCCTCGAAGTGTTGAACTTGAGCGGCAACTTCAGCGACTTGACTG
GAGATGATTGAGGAAGAGCAAGTGAGGAGTTTGATTGAAGCTGAGAAGCAACAAGGAGGAGTAACAGGTTGGCTTTCATGGGGAAG
CTCCATTGTTAGTGATCTGCTTACTGGTGGAGGTACTCAGGGTGGTGGAGCTAATAAGCCTAAAGACTCGTATATGGATCAACTGC
TCTGAAATTTATGTGTTGTGTGCTTGAAGGTCTTTGATACTCTTTTCTGGTTTTACTTTTTGACATTGTTGTAGAAAGAGTTCATA
GTTGAAGTCAAGAGAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889977 leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]6643e-067
NP_563921 ras group-related protein LRR 3 [Arabidopsis thaliana]6482e-065
XP_002530026 leucine-rich repeat-containing protein, putative [Ricinus communis]5891e-058
NP_189281 plant intracellular ras group-related LRR 2 [Arabidopsis thaliana]5693e-056
XP_002876976 leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]5693e-056

Swiss-Prot top hits (Blast detail)Scoree value
O61967 Protein lap12438e-020
Q3V1N1 Malignant fibrous histiocytoma-amplified sequence 1 homolog2421e-019
Q96NW7 Leucine-rich repeat-containing protein 72383e-019
Q80TE7 Leucine-rich repeat-containing protein 72356e-019
P70587 Leucine-rich repeat-containing protein 72356e-019

TrEMBL top hits (Blast detail)Scoree value
Q8W4Q3 At1g12970/F13K23_186481e-065
B9SVK7 Leucine-rich repeat-containing protein, putative5899e-059
Q9LRV8 Leucine-rich-repeat protein-like5692e-056
B9HTT2 Predicted protein5387e-053
B9FFQ3 Putative uncharacterized protein4922e-047

Arabidopsis top hits (Blast detail)Scoree value
AT1G12970.1 leucine-rich repeat family protein6487e-068
AT3G26500.1 leucine-rich repeat family protein5691e-058
AT5G05850.1 leucine-rich repeat family protein4588e-046
AT3G11330.1 leucine-rich repeat family protein4434e-044
AT4G26050.1 leucine-rich repeat family protein3135e-029

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information