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Information for unigene UN38584

FASTA Sequence
Unigene ID: UN38584Length: 1067 SSR 
GATGAGAGAACACATGAGAGAAATGGAGATTCCAGTTTTATGAATTACTATATACAAAGCAAAGCAAAAGCAACAAAAGACTAGAC
AGCATGCAACAAAGGTGGTGGATTTTGAGCATTGAGGAGGAGTTGAATGGGTTTGATCTGAAGTGCAGGACTGATGGTAAGCAAAG
CAATGAAGCAATCCACAGGAACTCTAGTTCCCCACAAGTTGAGAGATTCTAGTTTTCTGCATTTGTTGACAAGAGCAAGAAGGCCT
CTCTCTGTCACATGGCGGCAACACCACATGCTGATTGTCTTGAGATGATGGCAGCGTTCTGCAATGGCGAAAAGGGACTCGTCGGT
GATGAATGTTCCTCCAATGTTTAGATGCTGCAAGGAAGACGTTCTTGATACCAGTTGAACAACGCCAGAATCAGTAATGGCGGTCA
TGCCCCATAAAGAGATTGAGGTTAAATTGGCTACACATCTAGCGGAAGCTATTTGGTAAAGACCATTATCAGTTACATGACAACCC
CATCTGCTTCTAGATATGTCGAGTTCTCTGAGATTGTAAGCAAGATGTACAAGGCGAGAAGTGGAAGCATCGTCCATTTTCCAACC
AGCAAAGCTCAGAGACTCTCTTCTCGCCATTGATTGGTTCACAGCTTTTCTCCATTTCTTACAAACCCCACTTGCCCTATAAAAAA
CCTCATCAAAAACTTCAATTTTGTTTCCTTTAATGGAAGAACAAAATAAAAATGAAAACACTTACTGGGCCAATTCGGTGAAAGAG
GTAACCAGAGAAAATATATAAGCAAGAAGGTGTAAAGGTAACCGATCGATCGCTGCTTCTTCATCCATGTCTTCTAGTAAGAACTA
AGAACTTGTTGAATGAGAGATTAGTTGCAGAAAGTTTTTAAAATATATAAATATTCACAAAGAGAAGATTGTATCTATGCAATTCT
CCTCAATAGTTCTTCTTCATAATTACAAGAGGAAGAAGAAGAAGAAAATGTTGTCATTTTCTTAGTTTAATGTACAGAAGATGTGG
TCATCGTTCCGTCATACTTTTGAATCCCTCCTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002865025 F-box family protein [Arabidopsis lyrata subsp. lyrata]9969e-106
NP_201515 F-box protein [Arabidopsis thaliana]9896e-105
XP_002306478 predicted protein [Populus trichocarpa]7566e-078
XP_002282881 PREDICTED: hypothetical protein [Vitis vinifera]7512e-077
XP_002523621 ubiquitin-protein ligase, putative [Ricinus communis]7333e-075

Swiss-Prot top hits (Blast detail)Scoree value
Q9FH99 F-box protein At5g671409892e-106
Q9SKK0 EIN3-binding F-box protein 11641e-010
Q708Y0 EIN3-binding F-box protein 21362e-007
Q8RWU5 F-box/LRR-repeat protein 31343e-007
O49286 F-box/LRR-repeat protein 51343e-007

TrEMBL top hits (Blast detail)Scoree value
B9H6H8 Predicted protein7564e-078
B9SCA2 Ubiquitin-protein ligase, putative7332e-075
A9NN06 Putative uncharacterized protein6571e-066
C6SYX3 Putative uncharacterized protein6543e-066
C5Z4W4 Putative uncharacterized protein Sb10g0045506193e-062

Arabidopsis top hits (Blast detail)Scoree value
AT5G67140.1 F-box family protein9902e-107
AT2G25490.1 EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase1641e-011
AT5G23340.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits to 3545 proteins in 210 species: Archae - 0; Bacteria - 454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses - 15; Other Eukaryotes - 1159 (source: NCBI BLink).1594e-011
AT5G25350.1 EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding1362e-008
AT1G77000.1 SKP2B; ubiquitin-protein ligase1343e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

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