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Information for unigene UN38645

FASTA Sequence
Unigene ID: UN38645Length: 931 SSR 
GGGAAATTGAGAGGCCCCCTAGATGGTAAGGGTCAGAGAAAGGGTGAAATTGTTAAAGAAAAAAGAAAGGGTGGAAATAGAAGAGA
GAGTAAAATCTTAGGGCGAGAGGAGAAAAAAAGAAGGAGAAAAGGGAAGAGAGATAGAGAGAGAGAGAGAGAGGGAGTGGAGGAAG
CGGTTGGCTGGCTTGGTCGTCCCGCAACTGGAACAAGGGACAAGGGACATGAGTTGAGAGAGTCAGTTGGTCGGACGCCAAAGACT
TAAAAATTGAAACTCGTACGGGTTCAATAATCGATTTCGCTAAGCGAAAAAGCCTAATAAGAAGATCTGGGAGGATTCGGAGATGA
ATAGCGGCATAATTTTCCGGTGGGGAGATGTAACTGTGTATGAGGGAGGAGCTTGGGCCACCGCAATTTCGATTCTCTTAATATTT
CTCTTTCGTATCTTGTTCAAGTTTCGCTTCTTTTCTTCTCCTTCTCCTTCTCCCTCTCCATCCATTGCCGACTCTGTTTCCCATCC
CCAAATCCAATCAACAAGAACACGTAGAGTTGTTTGTGATTAAGATTTGAAATGGCTGATCCAAAACTTGGAGGGAAGCACAGAGG
CGTGGGAACATGTTATCCACAAATCCAACCCTCGCCTTTCTTACTCTGCTAGACGCTGCAAGCCAGACGATGGTGGTCCTATGAAG
TACCTAAGTGTGACTGTATTTGAGGATTGCTCCCCTGACATGTTGAAGGACTTCTACATGGACAACGATTTTAGGAAGCAATGGGA
TAAGACTGTCGTTGCTCATCACCAACTTCAGGTTGATAGCCATACCGGAATTGAGATCGGTCGCACTATCAAAAATTTCCCCTTGT
TGACATCAAGGGAGTACGTCCTTGCCTGGAAGTTGTGGTAGGGAAACAAGGACAACTTCTACTGTTTCACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002894547 hypothetical protein ARALYDRAFT_314809 [Arabidopsis lyrata subsp. lyrata]6311e-063
AAF79332 F14J16.24 [Arabidopsis thaliana]5952e-059
XP_002882805 predicted protein [Arabidopsis lyrata subsp. lyrata]5612e-055
BAC43323 unknown protein [Arabidopsis thaliana]5593e-055
NP_850573 lipid-binding START domain-containing protein [Arabidopsis thaliana]5593e-055

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q93YV2 Putative membrane related protein CP55961e-059
Q9LG14 F14J16.245952e-059
B9UY98 Truncated At3g130625592e-055
Q3EB74 At3g130625592e-055
Q8GWN9 Putative uncharacterized protein5592e-055

Arabidopsis top hits (Blast detail)Scoree value
AT1G55960.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13062.2); Has 177 Blast hits to 177 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).5967e-062
AT3G13062.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 235 Blast hits to 235 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).5591e-057
AT3G13062.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 235 Blast hits to 235 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).5591e-057
AT3G13062.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55960.1); Has 230 Blast hits to 230 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).3852e-037
AT4G14500.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23080.1); Has 257 Blast hits to 256 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).2401e-020

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  50%
 
81  50%

Unigene MembersMember information