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Information for unigene UN38681
| FASTA Sequence |
| Unigene ID: UN38681 | Length: 1086 |
SSR | | CAAATGGTATTGAGAGTTGAGAGGAATCAAAAACGGTTTGTGCAAGAGTATCACAATTCACAAAGAAGACGAAAAGCTGATTCATA
ATTGCTTGGTGTTCTTACAAGATTCAACCTTTGTGCTCAAGACAGATGCAACGAGGATTGAAACTGCGGATAAAACCGCAGCCACA
AAGGTAACAACAGAAACATACTCGGTATGACTTCTGATTCCTGCAGGAATTTCCCAGACAACGGATCTGGTTTGGGTCTTTGATCT
GCCTACTGACAAAACCAAACATCTTCTCTCTTCATGTTCCGCCTTTGGTACATGTCTCGAGCACAAGAACAAGTCTGGCTCTCCAA
ACTCTACTCTAGAGTATCCGCTCTCCCCAATAGGCTGATACCGAGCATGTAAAGGAAGCTTAACGCCGATTTCACCTTTTCCATTG
ATTTCGACATGAATCTCAACGACAGACCTGTTTGATCTGAACGAAGGCTGCTCGAGATCCGTGTCTCCAAACACAGAAACATCTCT
GAAAGCTCTGCGTTGTTGAAGACTGTGAAGCTCAAAAGGATCAGCAAAAACACCCAAAGGCAACCGTTCGACGATCACAAGCTCGT
GAAACTGAGACTGTGAGTGAAAAGGACGAAGCTTGATGGATGTGAGTAGATGACGATGCGAACCTTCACCTGTTATGTCTCTTTGT
TGTAGCATTGCTACAGCAGGAGGAGCATCTTCATAAGAAATGTTCTCAGAACATTGTTGAAGACGCAGGAAGGTTCGAAACTCTGA
CTCGTCTAAGGAGCTCTGTGTCGTGAAATAAGACTGCATGATGTAATGATCCGAGATACAAAACGTGTCCGAATCGGACATTCCAA
CCTGAGTAGTTGAGATGGAATCAAAGCATGACATCGCGAAGAAGAAGATGAAGATCGTGGATATCACCGACCTCCCGCGTTTGCTA
CCCATCGAATGTTTTTTTCAAATCGTGAATTGGGAATGAGAGAAAGGGGAGAGATAGAGAGAGAGAGAGACTAGATAACTCTGGAT
TCCTTCTGTTCCATAACTCTTCTTCAAGCTCTACACAGACCATTGTTCCGGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001190481 phosphatidylinositol glycan, class X [Arabidopsis thaliana] | 1008 | 4e-107 |
| NP_001190482 phosphatidylinositol glycan, class X [Arabidopsis thaliana] | 1004 | 1e-106 |
| NP_199497 phosphatidylinositol glycan, class X [Arabidopsis thaliana] | 968 | 2e-102 |
| XP_002865156 predicted protein [Arabidopsis lyrata subsp. lyrata] | 924 | 2e-097 |
| XP_002303430 predicted protein [Populus trichocarpa] | 490 | 4e-047 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LUK5 Genomic DNA, chromosome 5, P1 clone:MSD23 | 968 | 1e-102 |
| A9PIK5 Predicted protein | 490 | 3e-047 |
| A5BYQ3 Putative uncharacterized protein | 475 | 2e-045 |
| C6T4T0 Putative uncharacterized protein | 429 | 3e-040 |
| B9SRC7 Putative uncharacterized protein | 371 | 2e-033 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G46850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233); Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 4; Plants - 13; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | 968 | 6e-105 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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