 |
Information for unigene UN38823
| FASTA Sequence |
| Unigene ID: UN38823 | Length: 1445 |
SSR | | GAGAGTTTTAAGCGTACTGAGCAAGATGGGCTCGAGTCCAAACGTGATTTCTTACACCGCTCTCATGGAGTCTTACGGAAGAGGAG
GCAAATGCAACAACGCTGAAGCCATATTCAGGAGGATGCAGTCCTCAGGACCAGAGCCATCTGCTGTGACTTATCAGATCATACTC
AAGACTTTCGTAGAAGGGAACAAGTTTAAGGAAGCCGAAGAGGTTTTCGAGACTCTTTTAGATGAGAAGAGATCGCCGTTGAAGCC
TGATCAGAAGATGTATCACATGATGATATATATGTACAAGAAGGCTGGAAACTATGAGAAGGCTAGAAAAGTATTTGCTCGATGGC
TGAGAAAGGAGTTCCACAGTCTACTGTCACTTACAATAGCCTTATGTCCTTTGAAACTAACTATAAAGAAGTTTCTAAGATCTATG
ACCAGATGCAAAGATCTGGTATTCAACCTGATGTTGTAAGTTATGCTTTGCTTATCAAAGCATATGGAAGAGCGAGAAGAGAGGAG
GAAGCTCTATCTGTGTTTGAAGAGATGCTTGATGCTGGTGTAAGGCCGACGCATAAAGCTTATAACATTTTGCTTGATGCATTTGC
TATTTCTGGAATGGTGGAGCAAGCAAAGACCGTGTTTAAAAGCATGAGACGAGACAGATTTTATCCGGATCTGTGCTCTTACACAA
CAATGCTATCAGCGTATGTCAATGCTTCAGACATGGAGGGTGCCGAGAAATTCTTCAAGAGGATAAAAGTAGATGGTTTTGAACCG
AATGTAGTAACCTATGGGACGATGATAAAAGGTTATGCGAAAGCAAACGATCTTGATAAGGTTATGGAGGTATACGAGAAAATGAG
GTTAAGTGGCATCAAAGCGAATCAAACCATCTTGACAACTATCATGGATGCGTCTGGGAGGTGTAAGGATTTCGGGAGCGCTCTTA
GTTGGTACAAGGAGATGGAGAGCTGTGGAGTGCCACCTGATCAGAAAGCTAATAATGTGCTCTTGTCATTGGCTTCGACTCAAGAT
GAGCTGGAGGAAGCTAAGGAAGTTACTGGTCTCGTAGATGAGAAGACAGCGAGCCTTGCTGGAGTCTATCGAACTGATGATGATGA
TGATGAAGACAATTATATCACTAGTAGTGATGAGGATGAGGATGAGGATGAAGATGAGGATGACAATGAAGAAGAAGATGATGATG
TTGATGGTGCAAAAGAAACTGTGTTGTGTGATAACGAACAAGAAGAGTCTTTGGCTTATGTTGGCTCACAGACGGAAGAACTTGTT
GGGTTATGAAAACTACTACTATATGTGTTGTAATCATCGAATGCTAAAAGAAAGATTTTGCAGAAGAGGACTTGGTAGGTTGTGTC
CATTATTTGTGTCTGTAGTTTACAAGATGAAATATGTTACTCATTTGTAAGAAACATCTTTTGATTCTC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878256 pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 1267 | 5e-137 |
| NP_191463 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 1238 | 1e-133 |
| NP_974457 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 1238 | 1e-133 |
| CAB86932 putative protein [Arabidopsis thaliana] | 1238 | 1e-133 |
| XP_002298285 predicted protein [Populus trichocarpa] | 1112 | 5e-119 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LYT2 Pentatricopeptide repeat-containing protein At3g59040 | 1238 | 5e-135 |
| Q9LYZ9 Pentatricopeptide repeat-containing protein At5g02860 | 295 | 1e-025 |
| Q0WMY5 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic | 294 | 1e-025 |
| Q8GYP6 Pentatricopeptide repeat-containing protein At1g18900 | 294 | 1e-025 |
| Q9CAN6 Pentatricopeptide repeat-containing protein At1g63070, mitochondrial | 292 | 2e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3EAH8 Putative uncharacterized protein At3g59040.2 | 1238 | 8e-134 |
| B9GI17 Predicted protein | 1112 | 3e-119 |
| B9T2X9 Pentatricopeptide repeat-containing protein, putative | 1019 | 2e-108 |
| C5YIC9 Putative uncharacterized protein Sb07g005470 | 930 | 4e-098 |
| Q6Z1D0 Os08g0191900 protein | 929 | 5e-098 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G59040.2 pentatricopeptide (PPR) repeat-containing protein | 1238 | 4e-136 |
| AT3G59040.1 pentatricopeptide (PPR) repeat-containing protein | 1238 | 4e-136 |
| AT5G02860.1 pentatricopeptide (PPR) repeat-containing protein | 295 | 1e-026 |
| AT1G18900.1 pentatricopeptide (PPR) repeat-containing protein | 294 | 1e-026 |
| AT1G18900.2 pentatricopeptide (PPR) repeat-containing protein | 294 | 1e-026 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
