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Information for unigene UN38854
| FASTA Sequence |
| Unigene ID: UN38854 | Length: 1342 |
SSR | | GAAGTTTATGACAGATTCTGATACAATAGAGAAAACAAACAAGCCTTTGTAGTCTTTCTTCAATTCTCAAAACAAGATACAAAATG
TACCAAGAAACATAGTTGGAGATGTGAGCTCAGGGACATGGTTTCTAAGTATGAGAAATGTTCTTGCCAAAGAGTCCAGCTATGCC
TTTCTCAGGGTCGTTTTGCTTCACAATGGACTCACCAACCAATACCGCTTTAACTCCAGCGGCTTGTACATAGGCAATATCATCAG
GTGTAAACAAACCAGATTCACCAACCACAATCATGTCTTTCTCGCGGATTTGTCTACCATGCTCCCCTTCAAGAAGCTTCTTTGTA
TTACTAATGTCCACCTTAAATGTTTCAAGACTTCGGTTATTGATGCCAACAAGCTCGATCCCTTCTATCCCAAGAACACGACCCAT
CTCTCTCTCATCGTGCACCTCAACAAGGGTAGCCAAACCAAGCTTCTTGCAGAGCTTAAGCAAGTAGGTTATTTCCAGGTCAGTCA
ATATAGCAGCAATGAGCAAAACTGCGTCAGCACCTTTAAGCCGAGCATAGTAGATCTGCCATGGATCTACAATAAACTCTTTGCAT
AATAGGGGACACTTCACACCCAGCGCTTCTTATTGCTTCCAAGTTTTCAAAACCTCCCTTGAAATATTTTTGGTCAGTCAAAAACA
CTGAGACGTGCAGCACCGCCTCTTTCATAAGCTTGAGCAATCTCGACCGGGTCAAAATTCTCTTTCAGGATTCCTCTACTAGGAGA
AGCCTTCTTAACCTCAGCGATCAAAGCAGGGAAGCCAGTCCTTTGATGAGCCATCCTAAGCGCACCCACAAAATCCCTAGTGGGAG
GAGCATTCTCTACAGCTTTCTTTAACGCCTCAAGTGGGTTCACTTCCTTCATCCTGGAAACTTCTTGGTCTTTGTACCAAGTAATC
TCCTCCAAGATGTTAGTGGGAGAATCAGCATTATGCAATCTTAGCTCAAAGGGTCCAGAATATCCCAGTGGAGCCTTGCTTGGTGG
TTTTCTCCTGATCCTGATACCTTGGCTAATAGCTAATTCATTCTGATACATGTCTACTTCCCATTCCTTGATTCTTAGATCATTCT
CTACTGATGAAGAAGAAGAAGAAGAAGCAACACCTAAGCTCTGTTGAGCCCGGATCGTGAACTGCGACGGAGTTTTGGAACTGATC
CTTGTGTCCATGGCAAAACCTGAGACTGGACGTCTGATGGAGACAGAACCGATACACCGATGGAGAGAAGGTGAGACCAGTCTAAC
CGGAAGTCTCTGTCCAGCACTTTGAACCGGAACTAGTGCTTCCATTGCCGGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_178521 indole-3-glycerol phosphate synthase [Arabidopsis thaliana] | 866 | 1e-090 |
| XP_002883637 hypothetical protein ARALYDRAFT_480086 [Arabidopsis lyrata subsp. lyrata] | 791 | 7e-082 |
| AAM64536 putative indole-3-glycerol phosphate synthase [Arabidopsis thaliana] | 788 | 2e-081 |
| BAC42166 putative indole-3-glycerol phosphate synthase [Arabidopsis thaliana] | 786 | 3e-081 |
| XP_002321203 predicted protein [Populus trichocarpa] | 675 | 2e-068 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P49572 Indole-3-glycerol phosphate synthase, chloroplastic | 866 | 6e-092 |
| B0JTM2 Indole-3-glycerol phosphate synthase | 469 | 7e-046 |
| B7K0H0 Indole-3-glycerol phosphate synthase | 436 | 4e-042 |
| Q55508 Indole-3-glycerol phosphate synthase | 426 | 6e-041 |
| B1WQE4 Indole-3-glycerol phosphate synthase | 424 | 1e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q1EBW5 At2g04400 | 866 | 1e-090 |
| Q8GYM9 Putative indole-3-glycerol phosphate synthase | 786 | 2e-081 |
| B9IAU9 Predicted protein | 675 | 1e-068 |
| B9T1U0 Tryptophan biosynthesis protein, trpc, putative | 657 | 2e-066 |
| B4G1Z5 Putative uncharacterized protein | 655 | 3e-066 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G04400.1 indole-3-glycerol phosphate synthase (IGPS) | 866 | 5e-093 |
| AT5G48220.1 indole-3-glycerol phosphate synthase, putative | 625 | 5e-065 |
| AT5G48220.2 indole-3-glycerol phosphate synthase, putative | 625 | 5e-065 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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