 |
Information for unigene UN38855
| FASTA Sequence |
| Unigene ID: UN38855 | Length: 1281 |
SSR | | GAAACAAAACTTTTGGACACATAAGATCTGTCCATGGAGTCTTAAGAGAGTGTAATTCTCTTGTTTCTAGCTTTTAATGTTACAAA
AATAGTTCGTGAATTCATAAATAAAAACAAGCCAATACATGGCACCTTAAACTTCCCCATGGGATAGTGTTTGATGCAAAATCACT
GAATCATTGCTTCTCCTTCGACTTCTCTCTCATTGCTCTTCTTTTCTCTTCCCTAGCTTGAGAAATCTCCATCCTCACTTCAGTTT
TGCTCTTCCTTTGCTTCTTTATTATAGGTGCATTTTTAGATTTTGATTTCTTATCTTTCTTGCCACTTTTGTTCTCCTTTGATTTT
GCAAGTCTCTCCTTGCTTTCTTTAGTTTTCTTGAGTTGCTTCTTGGGAACGGAAGGTTTCTCCATCTCTTCCATGGCCTCAGCTTC
ATCATCATCACTGGACACATCAGCTTCATCTGCAGTTCCTAACGCCTCAGCTTCATCTTTAGTTTTCTTGAGTTGCTTCTTGGGAA
CGGAAGGTTTCTCCATCTCTTCCATGGCCTCAGCTTCCTCATCATCATCATCACTGGACACATCAGCTTCATCTACAGTTCCTAAC
GCCTCATCATCACCATCACCTTCTGAAGTTTGTTTCATGTTACTCATCTTCTTTAGCTTTGCCACAAAGAATCCATCCATGTTGTG
TACATGAGGATAAAAACGTTTGGTCTTGTTTAAAGACGGATGAAATCGATGTTCTCTAAATTTTACAAATCCGTCTTGGCCGAAGT
CGAGTCCAGTTTTAACGAGTTGAACACTCCTCTTTTTGAGCGCATAGTCTATGACAGCTTCGTTCTCAGCAACCATAAGTGAACAT
GTTGAGTAAACAATATATCCACCGGTTTTGGAAGTGGCATCCACCATATCAATAGCAGCGAGTAAAAGTTGCTTTTGCAAGTGAGC
AAATTTCTTTATATCCTCCAGGGATTTCGAAACTTTAACCGATTCATCTTTCGAAATGACCCCAGTCCCACTGCAAGGTGCATCCA
ACAATACTCTATCAACCGATTTCTCACCTAACACCTTTGGTAGATCTCTTCCATCATAGTTACAAACTATGGTATTTGTGACCCCC
ATGCGGTGCAGATTGGCATTTAGCGACTTGAGCCTAGGTACTTTCATCTCATTCGCGAATATCAAGCCGGTGTTTTTCATTAGAGC
AGCGACGTACGTAGTTTTACCCCCAGGAGCAGCAGCTACATCCACAATCCGCTCATTCTCTCGAGGGGCAAGGGCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866118 hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp. lyrata] | 1209 | 2e-130 |
| NP_850927 S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | 1203 | 1e-129 |
| BAH19490 AT5G55920 [Arabidopsis thaliana] | 1132 | 2e-121 |
| NP_194390 S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | 1100 | 1e-117 |
| XP_002869602 hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp. lyrata] | 1065 | 1e-113 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P46087 Putative ribosomal RNA methyltransferase NOP2 | 806 | 5e-085 |
| Q922K7 Putative ribosomal RNA methyltransferase NOP2 | 787 | 8e-083 |
| O94268 Putative ribosomal RNA methyltransferase nop2 | 757 | 3e-079 |
| P40991 Putative ribosomal RNA methyltransferase Nop2 | 714 | 2e-074 |
| Q60343 Putative methyltransferase MJ0026 | 331 | 6e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FG73 Nucleolar protein-like | 1203 | 8e-130 |
| B9DFH3 AT5G55920 protein (Fragment) | 1132 | 1e-121 |
| Q8VYM6 Putative uncharacterized protein At4g26600 | 1100 | 7e-118 |
| B9S9W8 Proliferating-cell nucleolar antigen p120, putative | 1014 | 6e-108 |
| A5AR63 Putative uncharacterized protein | 963 | 5e-102 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G55920.1 nucleolar protein, putative | 1203 | 4e-132 |
| AT4G26600.1 nucleolar protein, putative | 1100 | 4e-120 |
| AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | 255 | 4e-022 |
| AT5G26180.1 NOL1/NOP2/sun family protein | 180 | 2e-013 |
| AT5G26180.2 NOL1/NOP2/sun family protein | 180 | 2e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
