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Information for unigene UN38893
| FASTA Sequence |
| Unigene ID: UN38893 | Length: 832 |
SSR | | GGCACGAGGGTCTCTTCGTCTCTGACCACTTCGCTCCTCGGGCAATAGGTCTACTTTATTAATTGTCTGTGAATCATTTCTCGAAT
GGGGGACTCAGAAAACGCTAACCAACCTTCAAAGAAGAGAGGTGCCTTGAAGCAGCTGTCCCGTGAGAATCCAGACGATGATGATG
ACGACATTGGTTCAGCTGAACTTGAGAGTGGAACTTTCAAGAAGGCCCCTGATGAGGTCTTGGCAACTAGAAGAATTGTCAAAATC
AAGCGCAAAGACCCATCATCTGCTGCACCACCAGCAGCCGCAACTTCCAACCCTTTCGCTGGAATTCAATTGCTCCCTCCTACCGC
TGTGCCTGAGTCTAAAGTGGCTCCAGCTGAAGCCGTAGTTGAGGACAATCAAAAGGCAGCTGATACCGAAGACGGTGATGAAGTTG
ATAGTGAGAAGAAGGTTGATGTCAAAGATTCTACTGCTGGGGAAGAGCCTGAAAAGACTAAAGACAAGGATGATGAAAATGAGTGT
GGAAAGACATCTGATGCTGGTGTAGACCAGACCGTCTCGGGTGTTAGCAACGCTGTGGAAGGAACTGATCAAACTGAGGATCCTCT
TGAGAAGGTGGAATCAGGAGGTGGTGATCAGACTGAGAGAAAAGAAAAAGAAAGCGAAGCAAGCATTGAAGCAGAATCAGCAGATA
AGAACGGTGATAATAATAATAATAATGGCTCCTTGAGTTCTTTCCAGCAGCATTCAAGTAGCAAAAACGCCTTCACCGGACTCGCC
AGTACACAGTCTTCTGGATCTTCCTTCTCATTTGGTGTTGTGTCTCAGATGTTCAACT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564606 nucleoporin 50 protein [Arabidopsis thaliana] | 755 | 5e-078 |
| XP_002891695 Ran-binding protein 1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 744 | 1e-076 |
| XP_002885120 Ran-binding protein 1 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 443 | 8e-042 |
| CAN59845 hypothetical protein VITISV_004512 [Vitis vinifera] | 373 | 1e-033 |
| XP_002279977 PREDICTED: hypothetical protein [Vitis vinifera] | 346 | 1e-030 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C105 Chitinase-like protein PB1E7.04c | 125 | 3e-006 |
| P53214 Protein MTL1 | 121 | 8e-006 |
| B0Z4R9 Protein ycf2 | 120 | 1e-005 |
| O94317 Uncharacterized serine-rich protein C215.13 | 120 | 1e-005 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C829 At1g52380/F19K6_4 | 755 | 4e-078 |
| A5AWP1 Putative uncharacterized protein | 373 | 7e-034 |
| B9GWR6 Predicted protein | 343 | 2e-030 |
| Q9LW88 Genomic DNA, chromosome 3, P1 clone: MSL1 | 300 | 2e-025 |
| Q8LG62 Putative uncharacterized protein | 296 | 6e-025 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G52380.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein | 755 | 2e-080 |
| AT3G15970.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein | 300 | 1e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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