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Information for unigene UN38897

FASTA Sequence
Unigene ID: UN38897Length: 1350 SSR 
ACAATTATATACATAAAGAGAGAGAGAGGTAGATAACACTTGAGAGAGAGATGGTGTATGCAGGTTACTGCTTGAAGGAGAAGAAG
ACATGTGTGAGATGGGTGGAGAGATACTTCGATGACTGTCTTTGTAACCTGAACGATGAAGTCTCGTTCTCACTTGGAATCGTTAG
CCTTATCTGCTGGGGCGTGGCAGAGATTCCCCAGATCATTACCAACTTCCGTACAAAATCTAGTCATGGTGTCTCTCTATCTTTCC
TCCTCGCTTGGGTCGCTGGTGATATCTTCAATCTCATCGGGTGTCTTCTTGAACCAGCTACCTTGCCGACTCAGTTCTACACAGCC
TTGCTTTACACAGTGAGCACCGTGGTATTAGTGATCCAGACAATTTACTACGACTATATCTACAGACTTTGTACACATGGACGCAC
CAAGATCTGTCAAAAGGAGGAAGAGGATGAAGAGAAGAGGCCATTAAACCCACCGAAGACGATGGGATCTGCAATTTCCATCCCAG
GAGAATCTTACAAAGCTTCTCCTCTGAGAGAGTTCTATTACACGTCAGCGAGATCACTGGCCGGAAGCGGAACACCGCCTTTAAGA
ACGTCGTATTTTCGGGTGGCTAAGAGTGGACCTTCAGCCATGACAATAGATAGTGGTTCCTCCTCGGACGAAGACGAGACAATGTT
GACGCTTCCTGTTGTAACGGCTAAGACCATTACCCAACCAAGGCCAATCCCAAGACAGACAGGTTTTGGAACGTTCTTAGCCGCAT
CTGTTAGCCTTCCGCTGCAGGTCAAAAGCCTAGCGGAAAAGTATGCACATGCTTCAAGCAGGCGGCTTCTAAATGAAAGAAGAGTT
GAGCATAGCGCATTGGGACAATGGTTGGGATGGCTAATGGCAGCCATTTACATGGGTGGTCGCATCCCTCAGATCTGGCTAAACAT
CAAACGAGGAAGCGTGGAGGGATTGAATCCACTCATGTTTATATTTGCGCTTGTAGCCAATGCAACATACGTTGGTAGTATTCTTG
TAAGAACAACTGAATGGGATAGTATCAAAGCAAATCTCCCTTGGTTGCTTGATGCTATTGTCTGCGTCCTACTCGATCTATTTATC
ATATTGCAGTATATCTACTACAAGTATTGCAGCTCAAAAGGCGAAGAAGAAGAACATGGCTACGGAGACTATGTGGAAGCAAGCAA
AACTTTGGTTTCGTGAATCACTCTTTGCGTTACAGTGATTTCTAAGTATTGATTCGAGGGTGTATGTTTGTCTACGAATCTATTTA
TATATGATAATCATAGTTCATTTAGCACCAAAAGAGGGGATATACATTCAATATAACCTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568009 PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]18089e-200
BAH56966 AT4G36850 [Arabidopsis thaliana]16806e-185
XP_002533273 conserved hypothetical protein [Ricinus communis]13302e-144
CBI17580 unnamed protein product [Vitis vinifera]13071e-141
ACJ84546 unknown [Medicago truncatula]12872e-139

Swiss-Prot top hits (Blast detail)Scoree value
Q12010 Uncharacterized membrane protein YOL092W1929e-014
P38279 Protein RTC21892e-013
Q6ZP29 PQ-loop repeat-containing protein 21766e-012
Q8C4N4 PQ-loop repeat-containing protein 21741e-011
Q5ZJX0 PQ-loop repeat-containing protein 21552e-009

TrEMBL top hits (Blast detail)Scoree value
Q94AH7 Putative uncharacterized protein At4g3685018086e-200
C0Z2N7 AT4G36850 protein16804e-185
B9T4V4 Putative uncharacterized protein13302e-144
B7FIG7 Putative uncharacterized protein12872e-139
C6TMI0 Putative uncharacterized protein11903e-128

Arabidopsis top hits (Blast detail)Scoree value
AT4G36850.1 INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 599 Blast hits to 441 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 311; Plants - 38; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).18092e-202
AT2G41050.1 PQ-loop repeat family protein / transmembrane family protein3801e-036
AT4G20100.1 PQ-loop repeat family protein / transmembrane family protein3397e-032

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
85  71%
 
211  14%
 
191  14%

Unigene MembersMember information