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Information for unigene UN38898
| FASTA Sequence |
| Unigene ID: UN38898 | Length: 1572 |
SSR | | CGGCACGAGGATTTGCTTGCATCGAGATCAAAGCACAGATTTTCGATTTCATCATATATATGGCTACTTTTACTGGAAAAGTTAAA
GACAAGATCAATTTCAAGTATGAAGATGATGATGATGGATATGGCTATGGCTATGAAGAAGATTCGTCCACTCTTGATTCAATCCC
AACCAAAACAAAGCCTAGTTACCCCATCATCCACGACCACTCAGAAGAAGAAGAAGATTACGTCGATGACGGATTCGACTCACCCC
AACCAGTTCAACAAAAAGTAGACGTCAACTTGAAAAACGTCTTAACCGGTTTGATCGCAATCGTCACCGGTAGTAACAAGCCCCTC
GACGACAACGATGAGAAAACTCAATCCTCTTCTTCATCTTCCAACGTCTCTTTCCTCGGCTCCTCCGTCTACATACCAAGCGCCCC
GCCACTCCTCGAGCCCAACTACAGCGTCTACAAGGACCTCCTCGAAGCCGAGCCTCCCCACTGGCTCCCCGACAGCTCCACCACCA
CCTGCATGCACTGCTCCCTCCCCTTCACCCCCCTCACCCGCGGCAGGCACCACTGCCGCTTCTGCGGTGGGATTTTCTGCAAAAAC
TGCTCCCGAGGGAGGTGCCTGATGCCCGCGAGGTTCCGCCAACGGAGCCCCCAGCGGGTCTGCGACTCCTGCTACGAGAGGCTCGA
TCCTCTCCAGGGTCTCCTCATCAACTCCATCAGCAACGCCGTGCAAGTCGCCAAGCACGACGTTGTTGATTGGACGTGTGCGAGAG
GGTGGTTGAATCTGCCCGTTGGTTTATCCATGGAAGACGAGATCTACAAGGCGGCCAATACGTTGAGAGGTTACTGCCACGTGGCT
AGATCGGACCCTGAGAAGTCCATACCTCATGCGCTTCTCGGTCGAGCTAAGGGTTTGGCTATCCTAACCGTCGCTAAAGCTGGGGC
TTTCGTGTCGTACAGTGTCGGGACCGGTCTGGTCGTCTCGAGGAGATCAGACGGGTCCTGGTCGGCTCCGTCCGCCCTGCTTTCGG
TGGGGCTTGGATGGGGCGCTCAGGTTGGAGGGGAGCTGATGGATTTTATAATAGTGCTGCATGACTTGAAAGCTGTGAAGACGTTT
TGCAGCAGGATGCATTTCTCTCTAGGCGCCGGGTGCAGCGCGGCGGCTGGACCCGTAGGGAGAGTCTTGGAGGCTGACCTCCGAGC
TGGCGATAGAGGCTCTGGCCTCTGCTATACTTACAGCCGTAGCAAAGGGGCATTTGTGGGAGTATCGCTTGAAGGGAATGTGGTGA
TGACGAGAAGGGACATGAATGTGAAGTTCTATGGGGATCCGTATTTAAGCACCTCAGACATTCTACTTGGGATGGTTGATCAACCC
AAAGCGGCTCAACCATTGTACTCTGCTTTCAAAGACCTCTACGCAGGTTTGCGTCAGTAGTCAGTTTCAAACAACTCAGTGATGGT
AAAAACTTTTTATTGTACATGTACATAGCAATTATTTCTTTCTAGAACTTATGAAATTTTAGTATTTGTTTTAATTTAAATTAAGG
ATTGTTTACCGTCTTTCATTCAAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189909 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] | 1769 | 4e-195 |
| AAM60990 unknown [Arabidopsis thaliana] | 1769 | 4e-195 |
| BAJ33808 unnamed protein product [Thellungiella halophila] | 1684 | 3e-185 |
| XP_002875604 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1641 | 2e-180 |
| XP_002516204 zinc ion binding protein, putative [Ricinus communis] | 1519 | 3e-166 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9URW6 SH3 domain-containing protein PJ696.02 | 405 | 2e-038 |
| P32793 Protein YSC84 | 401 | 6e-038 |
| A7A261 LAS seventeen-binding protein 3 | 387 | 3e-036 |
| P43603 LAS seventeen-binding protein 3 | 387 | 3e-036 |
| O08641 SH3 domain-containing YSC84-like protein 1 | 386 | 3e-036 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LG81 Putative uncharacterized protein | 1769 | 2e-195 |
| Q9LXL1 Putative uncharacterized protein At3g43230 | 1769 | 2e-195 |
| B9RR35 Zinc ion binding protein, putative | 1519 | 2e-166 |
| A9PHU1 Putative uncharacterized protein | 1506 | 7e-165 |
| B9MT45 Predicted protein (Fragment) | 1506 | 7e-165 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G43230.1 zinc finger (FYVE type) family protein | 1807 | 5e-202 |
| AT1G29800.1 phosphoinositide binding / zinc ion binding | 977 | 9e-106 |
| AT1G29800.2 phosphoinositide binding / zinc ion binding | 977 | 9e-106 |
| AT1G20110.1 zinc finger (FYVE type) family protein | 153 | 3e-010 |
| AT2G14890.2 AGP9 (ARABINOGALACTAN PROTEIN 9) | 123 | 9e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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